Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182665g00001 ATGCGTTCGAGTTCGAATTCTGCTTCTGCTGGTACTGGCCGTCACCCCGTGTACCGCGGGGTGAGGCGTAGGAGCAATGGAAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAGCCTAATAGAATTTGGTTAGGGACGTTCCCTACTCCAGAAATGGCTGCGGTTGCATACGATGTAGCCGCCCTTGCCCTAAAAGGTAAGGACGCGGAGTTAAACTTTCCTAACTCGGCTTCTTCGCTCCCAATTCCAGCTTCCTTATCCCCACGTGACATTCAAGCGGCAGCGGCTAGTGCTGCCTCGGCCGCCGGGGCAGCAAAAGACGCTTTGAATGCTGAAGGATCAAGCTCAAGCCATGGGAATATTAATAAAAACAATGATGCTAATATTGTTCCTACATCATCAATGGCACATGATTTTGTGGATGAGGATTTGATCTTTGACATGCCTAATGTTTTGGTGAACATGGCTGAAGGAATGCTTCTTAGTCCTCCTCCTTTTGACATTGGTGGTGGTGGTGATGATGCTGCTCCAGAAAACATGGATGAGCCAAGCCTCTGGAATTTCCCTTAA 570 0.4895 MRSSSNSASAGTGRHPVYRGVRRRSNGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGKDAELNFPNSASSLPIPASLSPRDIQAAAASAASAAGAAKDALNAEGSSSSHGNINKNNDANIVPTSSMAHDFVDEDLIFDMPNVLVNMAEGMLLSPPPFDIGGGGDDAAPENMDEPSLWNFP 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182665g00001 189 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Stsc182665g00001 189 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Stsc182665g00001 189 MobiDBLite consensus disorder prediction 164 189 - -
Stsc182665g00001 189 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Stsc182665g00001 189 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 187 IPR045277 GO:0003700
Stsc182665g00001 189 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Stsc182665g00001 189 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Stsc182665g00001 189 MobiDBLite consensus disorder prediction 1 29 - -
Stsc182665g00001 189 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Stsc182665g00001 189 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Stsc182665g00001 189 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Stsc182665g00001 189 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182665g00001 Stsc-Chr182665 2531 3100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182665g00001 13 189 AP2-EREBP Transcription Factor Family AT2G36450 61.579 2.66e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc182665g00001 AP2 3.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182665g00001 - - vvi:100261339 232.261