Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182661g00001 ATGGGCATTGATGCGGAAGAAGAGAAGGGCGAACATCATGACTGTGGTGGGGATGGGTCATGTGTGGGGTCAATGGACGTTGATGGAATGCGAGTGGAGGATGTCCTTCTAATGGAGTTTAACACTTCCGAGGAAGCAAGAGAGTTTTATAATAACTACAGTCGAATAAAGGGTTTTTCAACAAGGTTAGGAAGGAAGGTACAAAATAGTGCGAGTGTTATAGTTAGGTACACATTTGTATGCAATAGAGAGGGGTTTCGTGAGAAGAAATATTTGGAAATGACTAATAGAAAGAAGGAGCACAAGGTAGTAACTAGATGTGGTTGTGTTGCAGAGATGAGGATAAAGAAGAAAGTTGGAAGTGGAAAATGGTACGTCTCGCGTTTTGTAGATGAACACAACCATGAGCTCGTTCCTGGGAAATTTGTGAATTACTTGAGATCGCATCAGAAAATTTCTGATGTTGAGGTTGCACATCTAACTAGCATGAGGGAGATTGGCATAGGCATTCCGAAGATATATGAATCATTTGCGGCTCAGTTGGGAGGTTTCAATCTGGTGAACTTTACCAAGCAAGACATGTATAATGAGGTTAGGAAACAAAGAGCTTTACAAGATGGTGATGTGAATGCGGTTATAAGATTTTTGGAGGGAGTTAGCAGGGTGGATGGGAGAATGTTTTGGAGGCATAGGGTTGGGCCCGGGGAGCATCTGTGCGATTTATTTTGGAGTGATGGAAGAAGTCAGTATGATTATGGAATTTTTGGGGATGTACTTGCCTTTGATGCAACATATGGACGGAACAAGTACAATCTTCCTGTTGTAGTTTTCTCCGGTGTTAACCACCACAACCAGACATGTGTTTTTGGAGCGGCCTTGGTTTCGTGTGAGTCACAAGAATCATATATATGGGTACTGGAAATGTTTTTAGAATGCATGGGTGGCAAAGTACCATTATCTGTTATCACTGATGGGGATCCAGCAATGCGCATAGCTATCCAGCGAGTCTTTCCTAATGCACATCACCGGCTCTGTGCTTGGCACCTCTTGAGGAATGCGACGACAAATATATGTGACCCACAGTTTACCTAG 1092 0.4295 MGIDAEEEKGEHHDCGGDGSCVGSMDVDGMRVEDVLLMEFNTSEEAREFYNNYSRIKGFSTRLGRKVQNSASVIVRYTFVCNREGFREKKYLEMTNRKKEHKVVTRCGCVAEMRIKKKVGSGKWYVSRFVDEHNHELVPGKFVNYLRSHQKISDVEVAHLTSMREIGIGIPKIYESFAAQLGGFNLVNFTKQDMYNEVRKQRALQDGDVNAVIRFLEGVSRVDGRMFWRHRVGPGEHLCDLFWSDGRSQYDYGIFGDVLAFDATYGRNKYNLPVVVFSGVNHHNQTCVFGAALVSCESQESYIWVLEMFLECMGGKVPLSVITDGDPAMRIAIQRVFPNAHHRLCAWHLLRNATTNICDPQFT 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182661g00001 363 PANTHER OS01G0519700 PROTEIN 25 358 - -
Stsc182661g00001 363 Pfam FAR1 DNA-binding domain 48 139 IPR004330 -
Stsc182661g00001 363 Pfam MULE transposase domain 258 352 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182661g00001 Stsc-Chr182661 3731 6438 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc182661g00001 MULE 4.9e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182661g00001 - - aip:107620408 574.318