Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182647g00002 ATGACTAAGACCACTGCTGCTTCTACCACACCCTGCTGCAGCAAAATAGGGATCAAGAAAGGCCCATGGAGCGCCGAGGAAGACGAGATCCTCGCCAATTTTGTCCACAAAGAAGGGGAGGGCCGCTGGCGTACCCTCCCCAAGCGGGCCGGGCTTCAGCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCTCCGTCAAGCGAGGCCAGATCGCTCCCGACGAGGAAGATCTCATCCTCCGCCTGCACCGTCTCCTGGGCAACAGGTGGGCTTTGATAGCTGGCAGATTACCTGGGAGGACTGATAACGAGATCAAGAATTACTGGAATACCCATCTAAGCAAGAAGCTCATCAAGCGAGGCATAGATCCAAGAACCCATAAGCCATTAGTCAACAGCACCAACAATATTAATTCTACTACTATTACTACTGTTACTTCAAATGCTGTTGTTGTTCTCAGCGATTCCCAGAAAGTTGGATATAATCATCATCATCATCATCATGATCGCTGTTCAAATGTAGTAACAACCTCTTCCATCGTAATGCCGCCACCACCGCCGCAACAACCTACGACGGTGGTTACTCCTGCATCAGAAATTGGTAACGTCATCAATAACAGCAAATTTGATTATGTTCCTACAATAAGTGCGGGTGGTGGAAACATAGAAGGGCATAATAATAATAATGCCGTTAATGATGGGAGTATTGTATTTTATCATGAAAATAATGATATGGAGAATGATGATACTGCGGAGGAAGATACATTAATGGTTTTTCTGAATTCTTTATTTGATGGCAACAATAATAATACTAATAATGAAGTGATGATGAATAATAACAATGGTAGTACTACTGAAAAGGAAGAAGAATTAGCGGCGTTTCAGCATTATTATCATCATCATGGTCATGGTCAGCATGATCATGATGCTACGATGTTCCCTCCACCAGTTTCAACTTCTTTTCGTCTTGAAGATTGGGAAGCTGAATTCAGCAATGCACTAATGAATCAACAAGATGCTTCATCATCACCACCACCTTCTATTAAGTAA 1065 0.4451 MTKTTAASTTPCCSKIGIKKGPWSAEEDEILANFVHKEGEGRWRTLPKRAGLQRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWALIAGRLPGRTDNEIKNYWNTHLSKKLIKRGIDPRTHKPLVNSTNNINSTTITTVTSNAVVVLSDSQKVGYNHHHHHHDRCSNVVTTSSIVMPPPPPQQPTTVVTPASEIGNVINNSKFDYVPTISAGGGNIEGHNNNNAVNDGSIVFYHENNDMENDDTAEEDTLMVFLNSLFDGNNNNTNNEVMMNNNNGSTTEKEEELAAFQHYYHHHGHGQHDHDATMFPPPVSTSFRLEDWEAEFSNALMNQQDASSSPPPSIK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182647g00002 354 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Stsc182647g00002 354 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Stsc182647g00002 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Stsc182647g00002 354 FunFam Myb transcription factor 17 73 - -
Stsc182647g00002 354 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Stsc182647g00002 354 PANTHER F14D16.11-RELATED 11 322 - -
Stsc182647g00002 354 SMART sant 19 69 IPR001005 -
Stsc182647g00002 354 SMART sant 72 120 IPR001005 -
Stsc182647g00002 354 FunFam transcription repressor MYB5-like 77 144 - -
Stsc182647g00002 354 CDD SANT 78 118 IPR001005 -
Stsc182647g00002 354 Gene3D - 77 145 - -
Stsc182647g00002 354 CDD SANT 22 67 IPR001005 -
Stsc182647g00002 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Stsc182647g00002 354 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Stsc182647g00002 354 Pfam Myb-like DNA-binding domain 77 118 IPR001005 -
Stsc182647g00002 354 Gene3D - 19 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182647g00002 Stsc-Chr182647 12999 14185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182647g00002 3 142 MYB Transcription Factor Family AT3G13540 77.857 2.67e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc182647g00002 Myb_DNA-binding 9.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182647g00002 K09422 - rvl:131315345 260.381