Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182644g00002 ATGGACACCAACCAAGTTAAGAATTTTCTAATCCAGAAAAAATTATGGAGATTAGTGGGTTTCTTGTCTACCCCAATTGCCCTACTTTGCTTTGCTTTGAGTTCCTCTTTCAAACAAGTATTTGGAGAATGGAACTTATTGAAGATACTCATCTATGTTACTCTGAGCTCCATTATCTGTACCATAATGTTACTTGCACACAAGTTCCATGTTTCTCGGAGTAGGTTATTGAAAGCACAGGTTAGCTTCTTGGGCTTTATGCTAACTTCTTGTTCGTCATTTTTATATGGTCAAAAAGTCAACGGAAAACCAGACATGTTTAGTTTGGTCTCGAGTGTTGCGTTTGCTCTCATGTCCTTGAGTTTGTCAAGGCAAATCGACTTCGGATTCGAGGTAGATCTCTTCAACTTCTTCCTTGGATACTTCTTAGTTCAACTCATGACCATTCACATTGCTCTTGCTTCTCTGGGTGCTTCGTTCTGTTATCTTCTCATGTTTCTTCGGTCTTACTTGGATACCAAGCAACCTGCAAAGGGGAGTAATGTTTCCCATTCGGTGGCGCAAATCGCGTTGAAAATTGAAGACAGAAGAAGCAAAATTCGGAAGGCGATTTTTGAAGGAGGGTGTGATGAAGAATGCTACAATGTCTACATCACTTGGAGGAGACAAATCCTTGATGAGAAAATGAAGAAGATTGAGCTGCACAAGCTTCACATAAAAGAGATCAAAGGTGTGCCGTTGGATTACTTGCAGAGAAAGATTCAACGCTGGATCATGGCTTTTGAATATTCTATTAGTATTCTGTTTTCTGAGGAAAGGAATCTAACTAACTCTGTGTTTTTGGGGTGTTCTTCTAGTTCTAACTATGCTGATCTCTGTTTCATGGAGCTATGCAGGCCACCAATGACTTTGCTATTGGATTTCGCTAGCGCCGTGGCAAAGGGCAAAGGCTTGCCGTTGCGATTGTTAAGGTTGCTCAAGGTTTTTGAGGCATTGAAAGAAATGTTGCCTGAGATTGAAACATTGTTCTCTGATCAATCTGGCGGCGCGGAAATAAGGGACATGGCGATTGGAATCTTGGCAAGGTTGAGGGAAGCAATTAAAGGTGTTTTTGCCGATTTGGAGAATCTTATATGCAAGAATGAGCCTTCAATCGGGATTGTTCATGGTGGAGGGATTCATCCAATTACTCATTATATAATGAACTACCTTGGTGTTGCTTGTAATAATTCTTTGATGACATTGGAGCAAGTTTTTGAGAGCAACAACAATAATAGTCATGACATTGGAGAAGATTTTGAAGGCTAA 1308 0.4037 MDTNQVKNFLIQKKLWRLVGFLSTPIALLCFALSSSFKQVFGEWNLLKILIYVTLSSIICTIMLLAHKFHVSRSRLLKAQVSFLGFMLTSCSSFLYGQKVNGKPDMFSLVSSVAFALMSLSLSRQIDFGFEVDLFNFFLGYFLVQLMTIHIALASLGASFCYLLMFLRSYLDTKQPAKGSNVSHSVAQIALKIEDRRSKIRKAIFEGGCDEECYNVYITWRRQILDEKMKKIELHKLHIKEIKGVPLDYLQRKIQRWIMAFEYSISILFSEERNLTNSVFLGCSSSSNYADLCFMELCRPPMTLLLDFASAVAKGKGLPLRLLRLLKVFEALKEMLPEIETLFSDQSGGAEIRDMAIGILARLREAIKGVFADLENLICKNEPSIGIVHGGGIHPITHYIMNYLGVACNNSLMTLEQVFESNNNNSHDIGEDFEG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182644g00002 435 SUPERFAMILY Cullin repeat-like 149 430 IPR016159 -
Stsc182644g00002 435 PANTHER EXOCYST COMPLEX PROTEIN EXO70 195 421 IPR004140 GO:0000145|GO:0006887
Stsc182644g00002 435 Gene3D Exocyst complex component Exo70 147 434 - -
Stsc182644g00002 435 Pfam Exo70 exocyst complex subunit 255 426 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182644g00002 Stsc-Chr182644 3151 4547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182644g00002 199 423 EXO70 exocyst subunit family AT5G58430 45.333 2.60e-55 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182644g00002 - - aip:107644445 540.421