Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182640g00001 ATGAGGTGCCTACAGTCAGGGGAGCCATTAGGAGGAGCAGTTGAAATGTTTCCATCGTCAGAATCTGTTTTTACCAGTGACTTCTCGGCAAGTCTTCATTCTTTCCTTGGTGGACAAATTGGCAACAAGAAGCCCGACACTGGCAATATAGAGGAAGCTGAATCATCCTTACGCGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTCTCTTAGGAAGATATGAATATCAGAAGGGAAATTTAGTAGCAGCTTTACATGTCTTTGAAGGAATAGATATAGTTGCTGTGACTCCCAAGATTAAAGATGCCCTTTCCAGAAGCAGAGAACGGCGTAAGAGACATTCCCAGAATAATGATGAATCGCAAATGTCTGTACATGGTGTTGCCTTATTGTTGGAAGCTGTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTTGGAAGGTTTAAAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATAGTGGAATCTTCATTACCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACTTTGAGCAATGCAGTTGAGCTACTTCCGGAACTATGGAAACTTGCTGATTGCCAGCGAGAAGCTATTTTGTCTTACCGGCGAGCACTCCTTCATGAATGGAATCTTGATGCAGAGACAGTAGCGAAGATTCAGAAAGAATTTGCCCTTTTTCTTCTATATAGTGGTGGGGAAGCAATGCCACCTGATCTTCGTTCCCAAATGGATGGATCGTTCGTGCCCAGAAACAACATTGAAGAGGCTATACTTCTTTTGATGATTTTGTTAAGAAAAGTCACTCTAAATAGAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCTCTATCTGTTTATGGGGATTTGACGGTTTTAGCCAATCAATTCGAAGAATTGCTTCCTGGGACTATCCATCGAAAGGAGAGGTTCTATGATTTAGCTCTTTGTTATTATGGAGCAGGGAAGAACGTGGAAGCACTGGATCTTCTTAGAAAAGTGCTGAGGAGTAGAGAGGACCCAAGACATGTTCCAAGTTTGTTAATGGCTTCTAAGATTTGTTGCGAGAACTTTACTGTTACTAAAGACCCTAAGGTAAGCTTTGCTCAGATGGCACTGGAGAACTTGGATGGAAGATGTAACCAGTTAGAAAATATGGCCAATTTCTTACTTGGTGTTTCACTTTCTGCATACTCGAAATTGGCCATTTCTGATGCTGAAAGGGTTAAGAGACAATCTGAGGCACGTCATGCCCTTGATACTGCCTGCAAATTGAGCAGAATGGAAGACCCTGTTGTATTATACCATCTCAGTTTAGAATATGCTGAGCAACGGAAGTTGGATGCTGCACTTTATTATGCTAAGTGCCTTGTAAAACTTGAAGTTGGCTCTAATGTTAAAAGTTGGTTACTGTTAGCACGGGTATTATCCGCACAAAAGCGGTTCTTGGATGCTGAGTCTATTATAAATGCTGCACTGGATCAGACTGGGAAATGGGATCAAGGTGATTTGTTACGAACAAAGGCGAAACTTCAGATTGCTCAGGGCCAGTTAAAGAGTGCCATTGAAACATATACTCAGCTTCTTGCTGTTCTTCAAGTTCAGAGTAAAAGTTTTGGTTCTCGGAATAAGCTATTTAAGGACAAAAGAGATCAAATTAGGAATTTGGAAGTTGAAGTATGGCATGATCTTGCTTATGTTTACATCAATCTTTCACAGTGGCGTGACGCAGAGGCCTGCCTTTCAAAATCTCGTGCCATCAAACCATACTCTTCCACTAGATGTCACGCAATAGGTACAATGTATGAAGCAAAAGGTCTTTACAAGGAAGCTCTAAAGGCATTTCGTGATGCTTTGGACGTCGATCCTGACCATGTCCCCAGCTTAATCTCCACAGCCATGGTTCTTACACGTTACAGTAGTCAATCGAACCCTGCAGTCAGAAGCTTTTTGATGGAGGCATTGCAGCACGACAGATTTTGTGCTTCTGCTTGGTATAATCTTGGCCTTCTCCACAAGGCTGATGGTAGAGAATCAGCATTAGTTGAAGCTGCTGAATGTTTTCAGGCAGCACATTCTCTTGAAGAATCTGAACCAGTTGAACCTTTCAGATGA 2145 0.42 MRCLQSGEPLGGAVEMFPSSESVFTSDFSASLHSFLGGQIGNKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNLVAALHVFEGIDIVAVTPKIKDALSRSRERRKRHSQNNDESQMSVHGVALLLEAVFLKAKSLQVLGRFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLSNAVELLPELWKLADCQREAILSYRRALLHEWNLDAETVAKIQKEFALFLLYSGGEAMPPDLRSQMDGSFVPRNNIEEAILLLMILLRKVTLNRIEWDPSILDHLSFALSVYGDLTVLANQFEELLPGTIHRKERFYDLALCYYGAGKNVEALDLLRKVLRSREDPRHVPSLLMASKICCENFTVTKDPKVSFAQMALENLDGRCNQLENMANFLLGVSLSAYSKLAISDAERVKRQSEARHALDTACKLSRMEDPVVLYHLSLEYAEQRKLDAALYYAKCLVKLEVGSNVKSWLLLARVLSAQKRFLDAESIINAALDQTGKWDQGDLLRTKAKLQIAQGQLKSAIETYTQLLAVLQVQSKSFGSRNKLFKDKRDQIRNLEVEVWHDLAYVYINLSQWRDAEACLSKSRAIKPYSSTRCHAIGTMYEAKGLYKEALKAFRDALDVDPDHVPSLISTAMVLTRYSSQSNPAVRSFLMEALQHDRFCASAWYNLGLLHKADGRESALVEAAECFQAAHSLEESEPVEPFR 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182640g00001 714 Pfam Tetratricopeptide repeat 605 635 IPR019734 GO:0005515
Stsc182640g00001 714 SUPERFAMILY TPR-like 134 350 IPR011990 GO:0005515
Stsc182640g00001 714 SUPERFAMILY TPR-like 513 687 IPR011990 GO:0005515
Stsc182640g00001 714 Gene3D Tetratricopeptide repeat domain 376 546 IPR011990 GO:0005515
Stsc182640g00001 714 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Stsc182640g00001 714 SMART tpr_5 602 635 IPR019734 GO:0005515
Stsc182640g00001 714 SMART tpr_5 133 166 IPR019734 GO:0005515
Stsc182640g00001 714 SMART tpr_5 476 509 IPR019734 GO:0005515
Stsc182640g00001 714 SMART tpr_5 318 351 IPR019734 GO:0005515
Stsc182640g00001 714 SMART tpr_5 512 545 IPR019734 GO:0005515
Stsc182640g00001 714 SMART tpr_5 672 708 IPR019734 GO:0005515
Stsc182640g00001 714 SMART tpr_5 568 601 IPR019734 GO:0005515
Stsc182640g00001 714 SMART tpr_5 441 474 IPR019734 GO:0005515
Stsc182640g00001 714 Gene3D Tetratricopeptide repeat domain 547 711 IPR011990 GO:0005515
Stsc182640g00001 714 ProSiteProfiles TPR repeat profile. 602 635 IPR019734 GO:0005515
Stsc182640g00001 714 Coils Coil 376 396 - -
Stsc182640g00001 714 SUPERFAMILY TPR-like 319 539 IPR011990 GO:0005515
Stsc182640g00001 714 Gene3D Tetratricopeptide repeat domain 38 366 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182640g00001 Stsc-Chr182640 5748 10501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182640g00001 1 714 Calmodulin-binding Proteins AT4G28600 57.793 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182640g00001 K21843 - gmx:100800762 1110.13