Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182624g00001 ATGATTACATTTATGGAGTCAAAGGAGAAAAGAAGAGAAGTAGAGGAGAAATGTGTGGATCCTCAGCTATGGCATGCCTGTGCTGGTGGCATGGTACAGATGCCACAGGTGAACAGCAAGGTCTATTACTTCCCTCAGGGCCATGCCGAGCATGCATGTGCTCCTGTCAACTTTAGGACCTGCCCCAAAGTGGTTCCGCCTATGCTTCCATGCAGGGTTACTGCTGTCAACTACATGGCTGATCCTGACACTGATGAGGTCTATGCCAAGCTTAGCCTTCTTCCTCTCACTGCCAGTGATCTTGCTGGAATCCATGAGCCTGAGCCTCAGCCTGAGCCTGAGCCTCAGGACAAGCCTGCTTCATTTGCAAAGACCCTCACTCAATCCGATGCCAACAATGGTGGAGGCTTTTCGGTTCCTAGGTATTGTGCCGAGACCATTTTCCCCAGGCTCGACTACTCGGCCGACCCTCCCGTACAGAGCATACTTGCAAAAGATGTTCACGGCGAGACATGGAAGTTTAGGCACATTTACAGGGGCACGCCCAGGCGCCATCTCCTAACTACCGGTTGGAGTACTTTTGTCAATCACAAGAAGCTTGTTGCTGGGGACTCAATTGTGTTTTTGAGGGCAGACAATGGGGAACTCTGTGTTGGGATTCGGCGAGCCAAGAAGGCTCTTGGCGGCGGGCCTGAGGCTTCTTCAGGTTGGAATCCGGCCGCTGGAAATTGTCCTCTGCCTTATGGTGGATTTCCGGGGTTTCTGAAGGAGGATGATATCAGGCTCTTGAGAAATGGTAACGGCAATGGACTGGACCCGGGCGCCAGAATGATGGGGAAGGGGAAAGTACGGCCGGAAGCAGTTATTGAAGCTGCTACTCTTGCTGCCAACAGGCAACCTTTTGAGGTGGTTTACTACCCTCGCGCGAGTACGCCGGAGTTCTGTGTGAAGGCTTCACTGGTTGAAGCAGCAATGCAGATTAGGTGGTGCTCTGGAATAAGGTTCAAGATGGCCTTTGAAACCGAGGACTCGTCTCGAATTAGTTGGTTTATGGGTACCATATCTTCAGTTCAGGTTGCTGATCCCCTTGGATGGCCTAACTCACCTTGGAGGCTTCTTCAGGTTACATGGGACGAACCAGATTTACTTCAAAATGTGAGAAGAGTGAGCCCATGGCTTGTGGAATTGGTGTCAAACATGCCGGCCCTTCATCTTTCACCATTCTCGCCACCGCGGAAGAAATTAAGAATGCCCCAACAGCCGGAATTTGGGGTTGATGGGCAAATTCCCTCTTATGGTTGTTTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGGTCATTATGGTATATCATTATCAGATCTCCACCTCAATAAACTGCACTCAGGTCTATATTCTACACCACCAATGAGGGTGCTCTCCAATAACTTACTCTTGCAAAAGCCCAGCACCACTGAAAATGTCTCTTGCTTGCTATCTATGGCGAGCTCCGTGCAATCTTCAAAGAAACCAGATGAAGGCAAGACGCCCCAGCTTGTGCTTTTTGGCCAAAAGATTCTCACGGAGCAGCAGCTCGCTCTGAGCAGCTCTGGGGATGCAGTCTCCCCTGTTCTTACCGGAAATAGTTCATCGGATGGAAATGCTGATAAACTCAATAATTTTTCTGATGGTTCTGCTTCTGCTCTGCATCACCCGGAACGCTCCTCTTGTGACAGGTTCCCCTGGTATAAGGATCAGCGTCAAGAAACCGAGCCCGGCCACTGCAAAGTTTTTATGGAATCCGAAGATGTAGGTCGGACATTGGACCTGTCGTTGCTTGGTTCGTATGATGAACTGCACAGAAAGCTAGCAGACATGTTTGGCATCGAAAGATCTGAGATGCTAAGTCACGTCCTCTACCGAGACATAAATGGTGCAGTTAAACACCTTGGAGATGAAGCATTTGGGTAA 1959 0.5003 MITFMESKEKRREVEEKCVDPQLWHACAGGMVQMPQVNSKVYYFPQGHAEHACAPVNFRTCPKVVPPMLPCRVTAVNYMADPDTDEVYAKLSLLPLTASDLAGIHEPEPQPEPEPQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQSILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGELCVGIRRAKKALGGGPEASSGWNPAAGNCPLPYGGFPGFLKEDDIRLLRNGNGNGLDPGARMMGKGKVRPEAVIEAATLAANRQPFEVVYYPRASTPEFCVKASLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLGWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPALHLSPFSPPRKKLRMPQQPEFGVDGQIPSYGCLPESTPAGMQGARHGHYGISLSDLHLNKLHSGLYSTPPMRVLSNNLLLQKPSTTENVSCLLSMASSVQSSKKPDEGKTPQLVLFGQKILTEQQLALSSSGDAVSPVLTGNSSSDGNADKLNNFSDGSASALHHPERSSCDRFPWYKDQRQETEPGHCKVFMESEDVGRTLDLSLLGSYDELHRKLADMFGIERSEMLSHVLYRDINGAVKHLGDEAFG 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182624g00001 652 CDD B3_DNA 121 222 IPR003340 GO:0003677
Stsc182624g00001 652 SMART B3_2 122 224 IPR003340 GO:0003677
Stsc182624g00001 652 ProSiteProfiles PB1 domain profile. 588 652 IPR000270 GO:0005515
Stsc182624g00001 652 Gene3D - 328 402 - -
Stsc182624g00001 652 MobiDBLite consensus disorder prediction 534 562 - -
Stsc182624g00001 652 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Stsc182624g00001 652 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Stsc182624g00001 652 FunFam Auxin response factor 120 224 - -
Stsc182624g00001 652 FunFam Auxin response factor 329 402 - -
Stsc182624g00001 652 Gene3D - 585 652 - -
Stsc182624g00001 652 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 649 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc182624g00001 652 MobiDBLite consensus disorder prediction 534 570 - -
Stsc182624g00001 652 Pfam Auxin response factor 291 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc182624g00001 652 SUPERFAMILY DNA-binding pseudobarrel domain 116 225 IPR015300 -
Stsc182624g00001 652 Gene3D - 120 224 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182624g00001 Stsc-Chr182624 6141 8998 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182624g00001 16 651 B3 DNA Binding Superfamily AT4G30080 56.476 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc182624g00001 B3 1.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182624g00001 - - gmx:100796522 1052.35