Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182622g00003 ATGGTTAACCCAAAACCAGGTACCATTCGCCATGCAGTCACAAGAAATGGACCTTTGTGGATCATCTTTTCGCATAGCATGTCTATTAGACTCACTGAAGAGCTGATGGTGTCTAGTAACAAGACCATTGATGGAAGAGGAGTTGATGTCTACTTTATTAAGGGTGCAGGCATTACAACCCAATACGTCAATAATGTGATCATCCATGGAATCAAGATTCATGACATTGTTCCTGGTAACGGTGGACTTATTAGAGATTCCGAGGATCATTACGGGTTTAGGACACGCAGTGATGGTGATGGAATCTCCATCTTCGGCGCCAGCAATATTTGGATTGATCATGTTTCCATGAGAAAGTGCTCTGATGGTATTATTGATGCCATTATGGGATCCACTGCCATTACCATCTCCAACAGTCATTTCACAGACCACAATGACGTGATGCTCTTTGGTGCCAATGAAGAACACACAATTGATAAGGTGATGCAAATCACTCTAGCTTTCAACCACTTTGGTAAGAGATTGATTCAAAGGATGCCAAGAGCCAGATATGGATTTGTGCATGTTGTTAACAATGATTATACTCATTGGGAAATGTATGCCATTGGCGGTAGCAGTCATCCTACAATTATTAGCGAAGGCAATCGATTTGTAGCTCCTGATAACAATAATGCTAAAGAGGTCACAAAGAGAGTAACTGAAGATGACTGGTCAAGCTGGCAATGGAGATCCATTGATGATGAGTTTGAGAATGGAGCATTTTTCGTACAATCTGGACCAGAAATGAAAACCAGACCATTCGCACTGAAGGATATGATTACTCCAAAGCCTAGTTCATATGTGCAAAGACTTACTCGTAATGCTGGCTCTCTTAAATGTAGAGTTGGTGAACCTTGCTAG 900 0.4144 MVNPKPGTIRHAVTRNGPLWIIFSHSMSIRLTEELMVSSNKTIDGRGVDVYFIKGAGITTQYVNNVIIHGIKIHDIVPGNGGLIRDSEDHYGFRTRSDGDGISIFGASNIWIDHVSMRKCSDGIIDAIMGSTAITISNSHFTDHNDVMLFGANEEHTIDKVMQITLAFNHFGKRLIQRMPRARYGFVHVVNNDYTHWEMYAIGGSSHPTIISEGNRFVAPDNNNAKEVTKRVTEDDWSSWQWRSIDDEFENGAFFVQSGPEMKTRPFALKDMITPKPSSYVQRLTRNAGSLKCRVGEPC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182622g00003 299 PANTHER PECTATE LYASE 18-RELATED 1 297 IPR045032 GO:0030570
Stsc182622g00003 299 SUPERFAMILY Pectin lyase-like 3 299 IPR011050 -
Stsc182622g00003 299 Gene3D - 1 292 IPR012334 -
Stsc182622g00003 299 SMART amb_all 26 223 IPR002022 -
Stsc182622g00003 299 Pfam Pectate lyase 34 217 IPR002022 -
Stsc182622g00003 299 PRINTS Pollen allergen Amb family signature 240 264 IPR018082 -
Stsc182622g00003 299 PRINTS Pollen allergen Amb family signature 178 197 IPR018082 -
Stsc182622g00003 299 PRINTS Pollen allergen Amb family signature 270 293 IPR018082 -
Stsc182622g00003 299 PRINTS Pollen allergen Amb family signature 34 50 IPR018082 -
Stsc182622g00003 299 PRINTS Pollen allergen Amb family signature 98 119 IPR018082 -
Stsc182622g00003 299 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182622g00003 Stsc-Chr182622 10684 12290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182622g00003 1 299 Polysaccharide Lyase AT1G14420 66.340 1.25e-150 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182622g00003 K01728 - gmx:100798579 481.485