Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc182622g00003 | ATGGTTAACCCAAAACCAGGTACCATTCGCCATGCAGTCACAAGAAATGGACCTTTGTGGATCATCTTTTCGCATAGCATGTCTATTAGACTCACTGAAGAGCTGATGGTGTCTAGTAACAAGACCATTGATGGAAGAGGAGTTGATGTCTACTTTATTAAGGGTGCAGGCATTACAACCCAATACGTCAATAATGTGATCATCCATGGAATCAAGATTCATGACATTGTTCCTGGTAACGGTGGACTTATTAGAGATTCCGAGGATCATTACGGGTTTAGGACACGCAGTGATGGTGATGGAATCTCCATCTTCGGCGCCAGCAATATTTGGATTGATCATGTTTCCATGAGAAAGTGCTCTGATGGTATTATTGATGCCATTATGGGATCCACTGCCATTACCATCTCCAACAGTCATTTCACAGACCACAATGACGTGATGCTCTTTGGTGCCAATGAAGAACACACAATTGATAAGGTGATGCAAATCACTCTAGCTTTCAACCACTTTGGTAAGAGATTGATTCAAAGGATGCCAAGAGCCAGATATGGATTTGTGCATGTTGTTAACAATGATTATACTCATTGGGAAATGTATGCCATTGGCGGTAGCAGTCATCCTACAATTATTAGCGAAGGCAATCGATTTGTAGCTCCTGATAACAATAATGCTAAAGAGGTCACAAAGAGAGTAACTGAAGATGACTGGTCAAGCTGGCAATGGAGATCCATTGATGATGAGTTTGAGAATGGAGCATTTTTCGTACAATCTGGACCAGAAATGAAAACCAGACCATTCGCACTGAAGGATATGATTACTCCAAAGCCTAGTTCATATGTGCAAAGACTTACTCGTAATGCTGGCTCTCTTAAATGTAGAGTTGGTGAACCTTGCTAG | 900 | 0.4144 | MVNPKPGTIRHAVTRNGPLWIIFSHSMSIRLTEELMVSSNKTIDGRGVDVYFIKGAGITTQYVNNVIIHGIKIHDIVPGNGGLIRDSEDHYGFRTRSDGDGISIFGASNIWIDHVSMRKCSDGIIDAIMGSTAITISNSHFTDHNDVMLFGANEEHTIDKVMQITLAFNHFGKRLIQRMPRARYGFVHVVNNDYTHWEMYAIGGSSHPTIISEGNRFVAPDNNNAKEVTKRVTEDDWSSWQWRSIDDEFENGAFFVQSGPEMKTRPFALKDMITPKPSSYVQRLTRNAGSLKCRVGEPC | 299 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc182622g00003 | 299 | PANTHER | PECTATE LYASE 18-RELATED | 1 | 297 | IPR045032 | GO:0030570 | |
Stsc182622g00003 | 299 | SUPERFAMILY | Pectin lyase-like | 3 | 299 | IPR011050 | - | |
Stsc182622g00003 | 299 | Gene3D | - | 1 | 292 | IPR012334 | - | |
Stsc182622g00003 | 299 | SMART | amb_all | 26 | 223 | IPR002022 | - | |
Stsc182622g00003 | 299 | Pfam | Pectate lyase | 34 | 217 | IPR002022 | - | |
Stsc182622g00003 | 299 | PRINTS | Pollen allergen Amb family signature | 240 | 264 | IPR018082 | - | |
Stsc182622g00003 | 299 | PRINTS | Pollen allergen Amb family signature | 178 | 197 | IPR018082 | - | |
Stsc182622g00003 | 299 | PRINTS | Pollen allergen Amb family signature | 270 | 293 | IPR018082 | - | |
Stsc182622g00003 | 299 | PRINTS | Pollen allergen Amb family signature | 34 | 50 | IPR018082 | - | |
Stsc182622g00003 | 299 | PRINTS | Pollen allergen Amb family signature | 98 | 119 | IPR018082 | - | |
Stsc182622g00003 | 299 | PRINTS | Pollen allergen Amb family signature | 200 | 219 | IPR018082 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc182622g00003 | Stsc-Chr182622 | 10684 | 12290 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc182622g00003 | 1 | 299 | Polysaccharide Lyase | AT1G14420 | 66.340 | 1.25e-150 | 428 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc182622g00003 | K01728 | - | gmx:100798579 | 481.485 |