Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182600g00001 ATGTCTTCATCAGAAATGAGTGACTGCAATAATAATGGTGGTAATAAGAAGCTCTTTGAAGGCCAAGCCCTCTTATACAAACACCTATTTAGCTTCTTCACCCCTATATGTCTTAAGTTGGCTGTTAAATTAGGTATACCAACCATAATCCACAACCATGGCAAATCCATCACTCTTTCGGAATTGATTTCAGCTCTGCATCTTCCTCCATCTAAAGCTTGCTTTGTTCCACGCCTCATGCGCTTTCTAGCACATAATGGACTTTTTGCTATTGTAAGAATTCATCATGACGATAATGGCGAACAAGAAGCAGAAGAAAAGGAAGGTTATGTTCTAACCTCAGCATCAGAGCTACTTGTTGAAGGAAGTGAAAATTGCTTATCCGCGATGGTTAAGTTTATCGTTCAACCCACGTTGGTTGATGGTTGGATTAGAATGGATGAGTGGATTTATGGGGAAGAGGTCTCAGTATTTGGGACTGCCTGTGGAGTTAGTTGGTGGGATTTGGTTGCAAACAACAGTGAACAAATGAATATTTTCAATGAGGGCATGGCAAGTGATTCTCAAATGATGAGCTTGGCATTAAGAGATTGCAATTCAGTATTTGAAGGGATAGAAACTATTGTGGATGTTGGTGGTGGAAATGGAGCCACCGGTAAAATCATCTCTGAGGCATATCCTGAGTTACAATATATTGTGTTTGATCTTCCATCAGTTGTAGCAAATTTGCAGGGAATTCGTAATTTGAGCTATGTCGGAGGAGACATGTTTAAATCTATCCCTGAAGCTAATGCAGTTCTATTAAAGTGGGTTTTACACAATTGGAATGATGATTATTGCAAAAAGATTCTAAAAAATTGCAAAGAATGTATTTTAAGAAAAGGAAAAGGAGGAAAAATTATCATCATCGAGGTAGTGATAAATGAAGGGCAAGACAAATATGATACGACTCAAGTTAAACTGGAGTTCGATATGACCATGATGGCTATGTTTAGTGCAAAAGAACGAACTGAAAAAGAATGGAAACAGCTCTTCACAGGATCTGGTTTCAATAACTACAAAATATTTCCTCTTTTTGGGTTTAGATCTCTTATTGAACTTTATGTTATTTAA 1113 0.3747 MSSSEMSDCNNNGGNKKLFEGQALLYKHLFSFFTPICLKLAVKLGIPTIIHNHGKSITLSELISALHLPPSKACFVPRLMRFLAHNGLFAIVRIHHDDNGEQEAEEKEGYVLTSASELLVEGSENCLSAMVKFIVQPTLVDGWIRMDEWIYGEEVSVFGTACGVSWWDLVANNSEQMNIFNEGMASDSQMMSLALRDCNSVFEGIETIVDVGGGNGATGKIISEAYPELQYIVFDLPSVVANLQGIRNLSYVGGDMFKSIPEANAVLLKWVLHNWNDDYCKKILKNCKECILRKGKGGKIIIIEVVINEGQDKYDTTQVKLEFDMTMMAMFSAKERTEKEWKQLFTGSGFNNYKIFPLFGFRSLIELYVI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182600g00001 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 367 IPR029063 -
Stsc182600g00001 370 Gene3D - 6 119 IPR036388 -
Stsc182600g00001 370 FunFam Coniferyl alcohol 9-O-methyltransferase 8 119 - -
Stsc182600g00001 370 FunFam O-methyltransferase ZRP4 121 369 - -
Stsc182600g00001 370 Pfam O-methyltransferase domain 143 351 IPR001077 GO:0008171
Stsc182600g00001 370 PIRSF O-mtase 1 369 IPR016461 GO:0008168
Stsc182600g00001 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 369 IPR016461 GO:0008168
Stsc182600g00001 370 Pfam Dimerisation domain 37 84 IPR012967 GO:0046983
Stsc182600g00001 370 PANTHER O-METHYLTRANSFERASE 25 354 IPR016461 GO:0008168
Stsc182600g00001 370 Gene3D Vaccinia Virus protein VP39 121 368 IPR029063 -
Stsc182600g00001 370 SUPERFAMILY "Winged helix" DNA-binding domain 16 123 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182600g00001 Stsc-Chr182600 1735 3780 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182600g00001 35 367 Monolignol Biosynthesis Gene Families AT5G54160 30.861 1.29e-44 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182600g00001 K22588 - gmx:100818724 394.43