Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182594g00002 ATGGACTTATCTTTCTTAAATGTGCTCTCCAATGGCATATCCTCACTTTTGCATCCATCATTTTCTGGAAACATGAACTCGGAACCTGTATCAATGTATTACCAAAGTGCAGAGAAGATACTTAAGTTGTTGAAACCAATTATTGACATGACTGTTCATTCTGATATATCTACTGACGAAGAGCTTAGTAAGTTATTCGAGGAGCTTGGTCAGGCTGTTGATGAGTTAAGGGAGATTTTTGAGAACTGGCATCCACTGTCCAGCAAATTTTACTTTGTGATGCAAGCTGAACCGTTGGTAGCTAGAATTCAGTCTTTAGGGTCCAATATTTTGCAGAAGATGAAGGCTTCACAGCAATGTCTACCTGATGATTTGGGGCATGATATGACATCAATCATTAAGGAAGCTATAGATGAACAACTGGAAGGTGAAGGACCAAGTTCTGAGATTCTGGAAAACATTGCTGAGATCCTTGATTTAAGGTCTAATCAAGATGTCTTGATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAACATTGCAGAAGCTGAATTCATTGATCAAATGATCTCTCTTGTGACTCGTATGCACGAGCGAATCATTGTTCTTAAGCAAGCTCAGAGCTCTATCCCGGATTCGGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTCATTGTGTCATCCGGGCAAACCTATGAGCGAGCTTTCATCAAGGACTGGATTGATATCGGGCTTATGGTTTGTCCAAAGACGCGCCAGACTCTAGTTCACACCAACCTAATTCCTAACTTCACAGTAAAAGCATTAATTGTTAATTGGTGTGAAACACACAATGTGACACTAGTTGATCCAGTGAAGTCCACAACTACAAACATAAACAAACATTCTCTCCTTGATGGATCCATTGAGTCCGGTTCAACTGATGAATCGACTGTTAGAACTTCTTTCGGAGGAAACAACCGAGAGGAAACATCACCATTGCATCCTATGCATCCTAGTTCAACTCCAGAAGATTCCTTTAGTAGTGGCATGGATAATGCACAGCATGTGGATCCTATAAGAGTATCATCTGCAGTTTCAGATGATAGGTCTACTAGCTCGGATGAAGAAAGTGTGGATTTATTTTCCCAATCATCAACTTCACCATCTAGAAGGGAAGATTCAAGTGCCTTGAGATCAGAGCAATCTCAAAACCATGTAAGAACTGATTCTGATTCCAGTGATCACCATAGTGAAAATTTCCCTCAAGCCATACAGGGTGATAGCAACAATGCTCCTCTTCCATCAACCAGTCCAATCCACAGCCGAGATGCTTCTGAGGAATTTGCTCCCGAGCCGGATGCTGCTGCTGTCAGGCCGATTCCACCAGGTGAGCCCGAGTTTTCTCCACAACTGGTGCAGCCAAGGTTTCCAAGAAAAACTGTATTAAATAGGCCATCAGAGAGGTTTGTCCCTAGGATAGTTTCTTCTGCTCCTGTTGAACCAAGAGGGGATGGAGTTGGTATTGAATCCAGGGTTAAGGAGTTAGTTGAGCTCTTGAAGAGCTCTTCTCTTGATACTCAGAGGGAAGCCACAGGAGAACTTCGCCTTCTTGCTAAGCACAACATGGATAACAGAATTGTGATTGCAAACTGTGGAGCCATTAGCTTGTTGGTCAATTTGCTTGAATCAACCGATACAACGATCCAAGAAAACTCGGTTACAGCACTTCTTAACTTATCAATCAATGACAACAACAAAACAGCAATTGCAAATGCTGGTGCAATTGAGCCTCTGATTCATGTCCTTGAGAATGGGAGTGCAGAAGCAAAGGAGAACTCGGCCGCCACTCTTTACAGCTTATCAGTGGTTGAGGAAAACAAGATCAGGATAGGGAAGGCTGGGGCAATTAAGCCTCTGGTTGAGTTGTTAAGGGATGGAACCCCAAGGGGTAAGAAAGATGCTTCCACTGCTTTATTTAACTTGTCCATATTTCACGAAAACAAGGATCGAATTGTAGAAGCTGGTGCTGTGAAGCACCTTGTAGATTTGATGGACCCTGCAGCTGGAATGGTTGATAAGGCAGTGGCTGTTCTAGCAAATCTTGCCACAATACCGGAAGGGAGAACCGCCATTGGACAACAAGGTGGAATTCCTCTTCTGGTTGAGGTTGTTGAGTTGGGTTCTACCAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATCTTTGTGCAAACCATCCGAGATATTTAAACATGGTACTCCAAGAAGGAGCCGTTCCGCCGTTAGTAGCTTTATCAAGATCAGGCACAGCAAGGGCTAAAGAGAAGGCCCTGTCTCTTCTAAATCATTTTAGAGATCGACGACATGGTGGTGCTGTGAGGAGTTAG 2409 0.4342 MDLSFLNVLSNGISSLLHPSFSGNMNSEPVSMYYQSAEKILKLLKPIIDMTVHSDISTDEELSKLFEELGQAVDELREIFENWHPLSSKFYFVMQAEPLVARIQSLGSNILQKMKASQQCLPDDLGHDMTSIIKEAIDEQLEGEGPSSEILENIAEILDLRSNQDVLIEAVALERLKENAEQTENIAEAEFIDQMISLVTRMHERIIVLKQAQSSIPDSVPADFCCPLSLELMTDPVIVSSGQTYERAFIKDWIDIGLMVCPKTRQTLVHTNLIPNFTVKALIVNWCETHNVTLVDPVKSTTTNINKHSLLDGSIESGSTDESTVRTSFGGNNREETSPLHPMHPSSTPEDSFSSGMDNAQHVDPIRVSSAVSDDRSTSSDEESVDLFSQSSTSPSRREDSSALRSEQSQNHVRTDSDSSDHHSENFPQAIQGDSNNAPLPSTSPIHSRDASEEFAPEPDAAAVRPIPPGEPEFSPQLVQPRFPRKTVLNRPSERFVPRIVSSAPVEPRGDGVGIESRVKELVELLKSSSLDTQREATGELRLLAKHNMDNRIVIANCGAISLLVNLLESTDTTIQENSVTALLNLSINDNNKTAIANAGAIEPLIHVLENGSAEAKENSAATLYSLSVVEENKIRIGKAGAIKPLVELLRDGTPRGKKDASTALFNLSIFHENKDRIVEAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPEGRTAIGQQGGIPLLVEVVELGSTRGKENAAAALLHLCANHPRYLNMVLQEGAVPPLVALSRSGTARAKEKALSLLNHFRDRRHGGAVRS 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182594g00002 802 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 298 IPR013083 -
Stsc182594g00002 802 FunFam RING-type E3 ubiquitin transferase 505 797 - -
Stsc182594g00002 802 Pfam U-box domain 220 291 IPR003613 GO:0004842|GO:0016567
Stsc182594g00002 802 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Stsc182594g00002 802 MobiDBLite consensus disorder prediction 383 399 - -
Stsc182594g00002 802 MobiDBLite consensus disorder prediction 310 478 - -
Stsc182594g00002 802 SUPERFAMILY ARM repeat 519 791 IPR016024 -
Stsc182594g00002 802 Pfam Armadillo/beta-catenin-like repeat 632 669 IPR000225 GO:0005515
Stsc182594g00002 802 Pfam Armadillo/beta-catenin-like repeat 673 709 IPR000225 GO:0005515
Stsc182594g00002 802 Pfam Armadillo/beta-catenin-like repeat 589 628 IPR000225 GO:0005515
Stsc182594g00002 802 Pfam Armadillo/beta-catenin-like repeat 550 587 IPR000225 GO:0005515
Stsc182594g00002 802 Coils Coil 163 193 - -
Stsc182594g00002 802 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Stsc182594g00002 802 CDD RING-Ubox_PUB 221 273 IPR045210 -
Stsc182594g00002 802 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 559 601 IPR000225 GO:0005515
Stsc182594g00002 802 MobiDBLite consensus disorder prediction 400 423 - -
Stsc182594g00002 802 SMART arm_5 507 546 IPR000225 GO:0005515
Stsc182594g00002 802 SMART arm_5 548 588 IPR000225 GO:0005515
Stsc182594g00002 802 SMART arm_5 589 629 IPR000225 GO:0005515
Stsc182594g00002 802 SMART arm_5 630 670 IPR000225 GO:0005515
Stsc182594g00002 802 SMART arm_5 711 751 IPR000225 GO:0005515
Stsc182594g00002 802 SMART arm_5 671 710 IPR000225 GO:0005515
Stsc182594g00002 802 SMART arm_5 752 793 IPR000225 GO:0005515
Stsc182594g00002 802 MobiDBLite consensus disorder prediction 310 359 - -
Stsc182594g00002 802 PANTHER U BOX DOMAIN-CONTAINING 31 792 - -
Stsc182594g00002 802 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Stsc182594g00002 802 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Stsc182594g00002 802 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 683 IPR000225 GO:0005515
Stsc182594g00002 802 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 682 723 IPR000225 GO:0005515
Stsc182594g00002 802 SUPERFAMILY RING/U-box 210 297 - -
Stsc182594g00002 802 Gene3D - 514 797 IPR011989 -
Stsc182594g00002 802 MobiDBLite consensus disorder prediction 424 449 - -
Stsc182594g00002 802 FunFam RING-type E3 ubiquitin transferase 219 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182594g00002 Stsc-Chr182594 8734 11653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182594g00002 180 801 U-box Gene Family AT2G23140 58.760 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182594g00002 - - adu:107458158 1350.88