Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182578g00001 ATGGAGAGACACTGTCTTCCTCACACCCATACACACACCACCGTTTCGCTGCTTGGAGAAAAACACAGCATTGACAACGGAATTTCCATGAATGCCCCTATGAGTTCCTTCAAATCCATACCCCAACCTCCTCCAATTACCATAAACCCCTTCCCGTTCCTCCAACAACAAACCGTATCCACTACTAACGATAACAACAACTTTCTCACGCAACAAAACATGGACTCCTTCGCTCTCCAACACTCTTTCTCTACTCTCAAACCCTCTTTCTTCAACAACAATCCTTTTGATAATGCCTTCGATTTCGGACCACACACCGGTTTCTTCTTCTCCGGGAACCATTCGCCTGACATGAGTTCCGGTACTGAATTCCCGCCGGCGACTGAATCCATGGTGCTTGGTGCTGGATTTGGTGCCTCCACTGGGTTTGAAATGGAGGAATTTGGTGGCTCTGGAAATGCTCTGTTTTCGAGCGGGAGAAAGGGATTGTGGCCTCTTGAGGTGCTTCCTACGGTTGTGGTCCCACCCACCACGCTGGAGGAACTTGGAGAAGGTAGCATTGAGGGTTCAGTGTGGAATTCTGAAGAGGATGGTGAGAGTAGTAAGGTGGTGGTGGTGGTTGACGAGAGTGAAAATGGAGGGCAGAAGGGGAAGATGAAGAAGAATGGAATGCCGGCTAAAAATCTGATGGCGGAGAGGCGGCGAAGGAAAAAGCTGAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCAAAGATTAGCAAGATGGATAGAGCTTCAATACTTGGGGATGCAGTTGACTACTTGAAGGAGTTAATGCAGCAAGTTAATGATCTTCACAATGAACTGGAGTCAACTCCACCTTGCTCTTCGCTCTCATCTTCCGACAGCCTTCAACCTTTGACACCCACACCACAAATCCTTTCTTGCCGGGTAAAGGAAGAACTGTATCCTAGCATCTTGCCAATCCCCAAAAACCAAACAGCAAAGGTGGAAGTTAAGGTAAGGGAAGGAAAAGCTGTCAACATTCATATGTTCTGTAGCCGCCGACCAGGTCTTTTGCTCTCTACAATGCAGGCTCTGGATAACCTTGGATTAGATGTTCAGCAGGCTGTTATTAGCTGCTTCAATGGATTTGCTTTAGACATCTTCAAAGCCCAGCAATGTAGAGAAGGGCAGGATGTGCTACCTGAGGAAATCAAAGCAGTTCTGCTGGATTCAGCAGGATCCAAATGA 1236 0.4741 MERHCLPHTHTHTTVSLLGEKHSIDNGISMNAPMSSFKSIPQPPPITINPFPFLQQQTVSTTNDNNNFLTQQNMDSFALQHSFSTLKPSFFNNNPFDNAFDFGPHTGFFFSGNHSPDMSSGTEFPPATESMVLGAGFGASTGFEMEEFGGSGNALFSSGRKGLWPLEVLPTVVVPPTTLEELGEGSIEGSVWNSEEDGESSKVVVVVDESENGGQKGKMKKNGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELMQQVNDLHNELESTPPCSSLSSSDSLQPLTPTPQILSCRVKEELYPSILPIPKNQTAKVEVKVREGKAVNIHMFCSRRPGLLLSTMQALDNLGLDVQQAVISCFNGFALDIFKAQQCREGQDVLPEEIKAVLLDSAGSK 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182578g00001 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 287 IPR036638 GO:0046983
Stsc182578g00001 411 CDD bHLH_AtAMS_like 226 284 - -
Stsc182578g00001 411 FunFam BHLH transcription factor 219 287 - -
Stsc182578g00001 411 Pfam Helix-loop-helix DNA-binding domain 230 272 IPR011598 GO:0046983
Stsc182578g00001 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 223 272 IPR011598 GO:0046983
Stsc182578g00001 411 SMART finulus 229 278 IPR011598 GO:0046983
Stsc182578g00001 411 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 94 410 - -
Stsc182578g00001 411 Gene3D - 218 286 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182578g00001 Stsc-Chr182578 5542 9179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182578g00001 94 387 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 54.070 4.69e-103 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc182578g00001 HLH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182578g00001 - - ahf:112697118 497.664