Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182565g00001 ATGGATTCATCAAGTTCTGCAGATGAAAGCACCACGTGCACAAATGACTCACTTTCCATAACCCTAATCCCGGCAATGACACCATTGACCGCCACATCCAAGAAACTGTCACCGCCGCCGCCAAATAGCTTATGCCGTGTCGGCAGCGGTGCCAGCACAATCGTCGATACAGACGTCGGTGGCGGCGTCACCACCGAAGTGGAGTCGCGAAAACTTCCTTCGTCCAAGTACAAAGGTGTGGTTCCCCAGCCAAACGGACGTTGGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTTTGGCTGGGGACCTTTAACGAGGAGGACGAGGCTGCTAAAGCCTACGACATCGCCGCTCAAAGGTTTCGAGGCAAGGACGCCGTCACCAACTTCAAGCCCCTCTGCGGCGGTGCTGTGACAGCCGCCGAGGACGAGGATTTCGAAACCGAGTTTCTCAACTCGCATTCGAAATCCGAGATCGTGGACATGTTGAGGAAGCACACATACAATGACGAGCTGGAGCAGAGCAAGCGGAGCCGCGGCCTCGTGGGGCGGCGGCTCAACCCCGCGGCGGGAAACGGTGGTTCCGGGGGAACGATGTCTTCATCGGGCGCGTGTGGAGGGAAGGCGCGTGAGCAGTTGTTCGAGAAGGCCGTTACGCCTAGTGACGTGGGAAAACTGAATCGGTTAGTTATACCAAAACAGCACGCGGAGAAACACTTTCCGTTACAAAACGGTTGCGGCGGAGCTGGAGGCGGAGCAGTGACGGCGGCAAAGGGCGTTTTGCTGAACTTCGAGGATGTGGGAGGAAAAGTGTGGCGGTTTCGTTACTCGTACTGGAACAGTAGCCAAAGCTACGTGCTAACGAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAACCTGAAAGCCGGTGACACGGTTTGTTTCCACCGGTCAACTGGACCGGACAGGCAACTGTTTATCGACTGGAAGGCAAGGGGTGTTGGTAACGATGGGATTGGGTTTTTCGGACCGGTTGGACAGGTTGTGGAGCCGGTTCAGATGGTTCGGCTCTTTGGTGTTAACATTTTGAAGCTTCCTGGGTCTGATGCTGGGGATAGTAATAATAGTAATAATGCTGCTGGTTCAATTGGTAGGTGCTACAATGGGAAGAGGAAAGAGATGGAACTGTTTACGTTGGAGTGTAGCAAGAAGACTAAGATCATTGGAGCTTTGTAA 1215 0.5424 MDSSSSADESTTCTNDSLSITLIPAMTPLTATSKKLSPPPPNSLCRVGSGASTIVDTDVGGGVTTEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAAKAYDIAAQRFRGKDAVTNFKPLCGGAVTAAEDEDFETEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGLVGRRLNPAAGNGGSGGTMSSSGACGGKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQNGCGGAGGGAVTAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDRQLFIDWKARGVGNDGIGFFGPVGQVVEPVQMVRLFGVNILKLPGSDAGDSNNSNNAAGSIGRCYNGKRKEMELFTLECSKKTKIIGAL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182565g00001 404 ProSiteProfiles AP2/ERF domain profile. 76 131 IPR001471 GO:0003700|GO:0006355
Stsc182565g00001 404 Gene3D AP2/ERF domain 75 132 IPR036955 GO:0003700|GO:0006355
Stsc182565g00001 404 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 71 370 IPR044800 GO:0003700
Stsc182565g00001 404 SMART rav1_2 76 137 IPR001471 GO:0003700|GO:0006355
Stsc182565g00001 404 SMART B3_2 214 326 IPR003340 GO:0003677
Stsc182565g00001 404 SUPERFAMILY DNA-binding domain 75 131 IPR016177 GO:0003677
Stsc182565g00001 404 Gene3D - 202 330 IPR015300 -
Stsc182565g00001 404 SUPERFAMILY DNA-binding pseudobarrel domain 212 320 IPR015300 -
Stsc182565g00001 404 ProSiteProfiles B3 DNA-binding domain profile. 214 325 IPR003340 GO:0003677
Stsc182565g00001 404 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
Stsc182565g00001 404 CDD AP2 75 130 IPR001471 GO:0003700|GO:0006355
Stsc182565g00001 404 Pfam B3 DNA binding domain 214 322 IPR003340 GO:0003677
Stsc182565g00001 404 MobiDBLite consensus disorder prediction 184 206 - -
Stsc182565g00001 404 FunFam AP2 domain-containing protein RAP2.8 75 132 - -
Stsc182565g00001 404 CDD B3_DNA 213 311 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182565g00001 Stsc-Chr182565 4372 6116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182565g00001 4 403 RAV Transcription Factor Family AT1G13260 56.020 3.50e-141 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Stsc182565g00001 B3 9.9e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182565g00001 K09287 - gmx:100801107 573.163