Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182551g00002 ATGGAGATAGCGGGCGGTGCTGACGTGGCAGAGAGCGTGGCGCAGTTCGCCCGGAGGCGACAACGCGGGGTTTGTGTCCTCAGCGGGAGTGGATCCGTAGCTAATGTTACCATCAGACAGCCCACGGCGCCTGGCGCCGTGGTACTTCATGGAAGGTTCGAGATCTTGTCCTTAACAGGAGCGTTTTTGCCTGGTCCTGCCCCTCCTGGGTCCACGGGATTAACCGTGTACCTTGCTGGTGGGCAGGGCCAGGTTATTGGAGGGAGTGTTGTTGGGTCACTTGTAGCTGTTGGGCCTGTTATGGTCATTGCGGCCACTTTTGCTAATGCAACCTATGAGAGGCTCCCTCTTGACGATGAAGATGAGGGGCCTAGTGGTGGCGGTGGTAGTAGTGGTGGTACTGGAGGAGGTGCAGGTGGTGGAGGATCTCCGCCACCACATCCTCCTCCAGGAATTGGAGGAAGTGGAGGCCATCACCAGTTACAAGCCGGTGGTGGCCTTCCGGATCCAACATCTCTTCCTTTGTATAACATGCCACCTAATTTGATGCCTAATGGAGGGCAGGTAGGGCATGAGGCTTATCCTTGGCCTCATGGACGACCACCTTACTGA 612 0.5686 MEIAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTIRQPTAPGAVVLHGRFEILSLTGAFLPGPAPPGSTGLTVYLAGGQGQVIGGSVVGSLVAVGPVMVIAATFANATYERLPLDDEDEGPSGGGGSSGGTGGGAGGGGSPPPHPPPGIGGSGGHHQLQAGGGLPDPTSLPLYNMPPNLMPNGGQVGHEAYPWPHGRPPY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182551g00002 203 CDD DUF296 2 107 IPR005175 -
Stsc182551g00002 203 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 199 IPR014476 GO:0003680
Stsc182551g00002 203 FunFam AT-hook motif nuclear-localized protein 1 122 - -
Stsc182551g00002 203 Gene3D - 1 122 - -
Stsc182551g00002 203 Pfam Plants and Prokaryotes Conserved (PCC) domain 1 108 IPR005175 -
Stsc182551g00002 203 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 120 - -
Stsc182551g00002 203 MobiDBLite consensus disorder prediction 115 203 - -
Stsc182551g00002 203 PIRSF ESCAROLA 1 203 IPR014476 GO:0003680
Stsc182551g00002 203 ProSiteProfiles PPC domain profile profile. 1 130 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182551g00002 Stsc-Chr182551 9845 10456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182551g00002 1 203 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 62.319 1.49e-68 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182551g00002 - - ahf:112778740 288.885