Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182534g00004 ATGCATGGGTCCGGTCCTGAGGAGTGGAAGCACAGCCGGCACATGTGGCCCAACGCCACTGCTGTAGCCCCCGATTCTTCACCGTCTCAATTTATATGCAAAGATGGACGCAAGATTTATGTTGGTGATTGTGCACTTTTCAAGCTACCCCGGCATTCCCCACCTTTTATTGGAATAATACGCAAGTTTATATTTAATAAGGAAGAAAGTCCAACTTTAGAAGTGAATTGGCTTTACCGACATGCTGATGTGAAGCTTAGCAAGGGTGTATTGGAAGCTGCCCCAAACGAAGTCTTCTACTCCTATCACAAGGATGAGATATCTGCTGCATCATTACTCCATCCTTGTAAAGTCGCGTTCCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCTGCGTTTGTCTGCAGGCGAGTGTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAGGAATACATTAATGCTGTTCCGGAAGAAGTTGACCGGTTATTAGATAAGACAAAACTAGAAATGCATGGGGCAGCGCAGTCGGGAGGCCGTTCTCCAAAACTTTTGAATGGTCCGACATCAACACAATCATTGAAATCTGGTTCTGATAGTGTTCAAAATAGTTCTTCCTTTGGTACACAGGTTAAAGGGAAAAAGAGAGAAAGGGGTGATCTGGGTTCTGATTCATCCAAAAGAGAGCGGTTATTTAAAGCAGAAGATGGTGATTTTGGCACAGTTAGATCTGAGATCATGTTGAAGACAGAGATAAGTAAAATTACTGACAAAGGTGGGCTTGTAGACTTTGAAGGAGTTGAAAGACTTGTACAGCTCATGCAACCTGACAGTGCTGATAAAAAAATCGATTTGGGTGGGAGAATAATCCTTGTTAATGTAATAGCAGCAACAGAGCGTGATGACTGTCTTGGCTGGTTTGTACAGCTCAGGGGTTTGCCTGTGTTGGATGAATGGCTCCAGGAGGTCCACAAGGGGAAAAATGGGGACAGTAATACCCTTAAAGAAGGCGATAAATCAGTGGAGGAATTTTTGTTGGCCTTACTTCGTGCATTGGATAGGCTTCCTGTTAACCTTCATGCATTACAAACATGCAATGTTGGGAAGTCTGTTAATCATTTACGCACTCACAAAAATTCTGAAATTCAGAGGAAAGCTAGGAGTTTGGTAGACACATGGAAGAAACGTGTTGAGGCTGAAATGAATATGACTGATTCAAAAGCTGGTTCTACACGTCCTGTGTCTTGGCAAGCAAAGCCAGCAGCTTCTGAGGTCTCTCATGTTGGAAGTAAGAAAACTGGAGTATCTGAGAATTCTGCAAAAGGATCTGCAATTCAACCGTCAGTATCTAAAAATTCTTTGGCTAGGCATGGATCGGGGGAAGCAATGTCGAAATCTTCAGCTCCTAGTTCAATTAAATTGATGACTAACTCTGCGGGTTGTACCTCTAAAGATCAGAATCTTAAGGCGGTAGCATCAGATCAACCACTGACACCTATCAAGGAGGAAAGGAGCAGCAGTTCTAGTCAGTCCCAAAACAACAGCTTATCTTGTTCTAGTGAACATGCAAAAACAATTGGGTCTTGTAGGGAGGATTCGAGGAGTTCTACTGCCGTGTCAATGAGTGTGAGCAAAATTGCAGGTGGTACATCTCGAACTCGGAAGTCAAGCAATGGTTTACATGGGACTAGTGTTGCGCTTTCTCAGAAGGAGCCCACCTCAGGAAGAAGCTCTGCTAGAAATTCACCTTCTGAAAAAGTTTCACCAACTCGAGTGTCCCAGGAAAAATCTTCTGATCTGCCACTTACTGATCAGGGGAATAATCAACGCCTTATTCTCAGGTTGCCAAATACTGCCCGTAGTCCTTCTAGGAGTGCTAGTGGTGCTGCTTTTGAGGAACCTGCCATTCCTTGTGGCATAGCTTTGCCTTCTGCTGACAAGAATGAATCTCGGGATAGAAGAGTTAAAGCTAAGAATGATGGTTTGCATACCATTGTTTCATCTGTGATAACTGATGCCTCTGCTACTAATGAAGCTTCAACTGGTGGTGAGGATGGTAAGGTCTCTCCAGTAGCTGATGAACAGGGAAGGGTTAATGAAGATGGTGATCAGGTACCAGAAACGTCGAAACAAACTAATTCGTCACCGGGGTTTATCCCTAGATCAGGGCAGACTTTTGCTGCTTCTTTAAGTCCTATGAATGCATTAGTTGAAAGCTGTGTGAAATTTTCTGAAGCAAGCGCCTCTGTCTCTCCCGGAGATGATGGGATGAACTTACTTGCTACTGTAGCTGCAGGGGAGATATCCAGATCTGAAAATGTCTCTCCTCTGGCTTCACCTGAGAGGAAGTCTTCTGCTGCAGATGAGTCTAGCTCAGGCAATGTTTCCAAGTTAAAGCATCCAGGTGAAATCACTGCTAACTCTGTTGCACAATCTGATGGAGGGGCTTCAGCAGAGCCTCACTTGAAAGCTGTTGAGCCAGTGCAATTTAAAAATGATTCAAGGTACCCTGTGACAACGACATCGCGTGGTTCTTCTGGAGATGAAGCCGTTTCATCCAGTTGTAAAGAGAAAACTGGTGATGACAGAGCTCAAATGAATGTGTCCACTACAGATTTGTCGCAAAATACTGAATCTCCACGTGTACAGCCTGAAACTGTTGAGAGTGCTTCTGAAACTGTAATATTATCTAAAAAGGAGACTCGAGAAGAGCCAGGAAGTGAGAACCATTTTCATGTGCAGAGGGATTTGGGAAGTCAGTGGGCTAAACACAGCAGTTCAGACTCTAAAAAGGAGATGGTTGACCACTTGGATGAGGCAATTGTGAAGAATGACGAAATGTTAGTTTCCAAAGAGACCATTACAAGTCTAAAGATTGAAAAGGAGTTAGGAGAAAAGTTACTCAAGTTATCTTCAGATGTAGGTAAGGATAACAAGATTAGTGCGGAGGTTACTGGTATATCAGTGCAAAAGTCGTCATCAGTTGCAGATAGCTGCGAGTCTCTAGATTTTAAAAAGGTGGATGTGACTCCGCCTTCTGCTTCGGGTAATTCTTTGATGGCTTCCAGGGATGAGCATGCAAATGAGATGAAGGTGGCTTCCAACAATCCTGACGAAAAACAGATGGATCCACAGCCAACAGCTCTTCCTGATGTTAGTGGATGCAGCAAAGATATTTCAAGTCTGAAGGAGGTTCTTGGTCAATGTGCTGGTTCATCAAATCCCCCAGAGTTGTCCAAAGTTACTGCAAAAGAAAATGCAGTGTCAAAAACTTCTGAGGGTAACTTAGTTGGAAAGGACTCTGATGTTGCTGGTGAGCACAGTACCCAACCATCCCTACCTGTTGCTGGGTCTGATGCAGGTGTAATATTAGACTTCGATCTAAATGAGGGCTTTGCTGTTGATGATGCTAACCATGGGGAGATTGTTAGGCAGGAGGAACATATCACATCATCTGCAGTCCATAATCCTTGTGCATTGCCTTTTCCCATTTCATCCATCTCTGGGGGTTTCCCTGCAACAATTACAGTGGCATCTGCTGCCAAGGGACCAGTTATTCCACCAGAAAACCCATTGCGCACTAAGGGTGAACTTGGATGGAAAGGCTCTGCTGCTACCAGTGCCTTCCGGCCAGCTGAACCTAGAAAAAATTCAGACACACCATCAACTACTGGTGATATTCATTCTGTTGATTCCACACCATCAAAACAAGGCCGAGCTCCTTTAGATTTTGATTTGAATGTTCCGGATGAAAGAAGTTTTGAAGATGTTGGTTCACATGGTTCTTTAGAATCTGGGCCCCCTGATCGCACCACAATGGGACTCGATCTTGATTTGAACAGAGTTGATGAAACTCCCGATGCTGCTCCTTTCTCTATGAGTAAACTGGATTTTTCTACATTGCCAAGTAAGCCTTCACTGTCTGGGGTGTTATCTAATGGTGGAAATGTGTCAAGAGACTTCGATTTGAATAATGGACCAGGCCTTGATGAAGTTAGCACTGAAGTCCCAGCTCGAAGTCAGCAGATGAAAAATAGTGCACCATTTCCATCTGCTATCCATGGTGCAAGAACCAACAATGCTGAATATGGGAATTATTCATCATGGTTTCCCCCAGGAAATTCTTATTCTGCAATTACTGTCCCTCCACTTCTTCCTGGTAGAGGTGAACAGAGTTATGTTGCAGCTACTGGGGCACAGCGGATAATGGGACCCACAGGTAGTGCAGCCTTTGGTCCTGAGCTCTACCGGGGGCCAGTGCTTTCATCTGCTCCTGCAGTTGCTTACCCTCCTACCGCACCCTTTCCATATCCAGGAGGGTTTCCATTTGAGACTAGTTTTCCATTGTCTTCAAACTCCTTTTCTGTTGGTTCAGCAGCATTTATTGATTCATCAACAGTTGGTGGACTTTGCTTTCCTACCATGCCATCGCAGCCAGTTCCACCTGGTGGTGTTGTCTCATCAACATATCCACGTCCATATGTCATGAGTCTTCCTGGGGGTACAAGTAATGTGATTCCTGACAACCGAAAATGGGGAAGTCAGAGTCTGGATCTTAATTCAGGCCCTGGTGGTACAGATACAGACCGGAGAGAGGAACATATGAAGATGTTTCAGGTGGCAGGTGTTATGAAGAGAAAAGAACCTGACGGTGGTTGGGATGGAGCTGATAGATTCAGCTACAAGCAGCCCTCATGGCAGTAG 4713 0.4445 MHGSGPEEWKHSRHMWPNATAVAPDSSPSQFICKDGRKIYVGDCALFKLPRHSPPFIGIIRKFIFNKEESPTLEVNWLYRHADVKLSKGVLEAAPNEVFYSYHKDEISAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKEYINAVPEEVDRLLDKTKLEMHGAAQSGGRSPKLLNGPTSTQSLKSGSDSVQNSSSFGTQVKGKKRERGDLGSDSSKRERLFKAEDGDFGTVRSEIMLKTEISKITDKGGLVDFEGVERLVQLMQPDSADKKIDLGGRIILVNVIAATERDDCLGWFVQLRGLPVLDEWLQEVHKGKNGDSNTLKEGDKSVEEFLLALLRALDRLPVNLHALQTCNVGKSVNHLRTHKNSEIQRKARSLVDTWKKRVEAEMNMTDSKAGSTRPVSWQAKPAASEVSHVGSKKTGVSENSAKGSAIQPSVSKNSLARHGSGEAMSKSSAPSSIKLMTNSAGCTSKDQNLKAVASDQPLTPIKEERSSSSSQSQNNSLSCSSEHAKTIGSCREDSRSSTAVSMSVSKIAGGTSRTRKSSNGLHGTSVALSQKEPTSGRSSARNSPSEKVSPTRVSQEKSSDLPLTDQGNNQRLILRLPNTARSPSRSASGAAFEEPAIPCGIALPSADKNESRDRRVKAKNDGLHTIVSSVITDASATNEASTGGEDGKVSPVADEQGRVNEDGDQVPETSKQTNSSPGFIPRSGQTFAASLSPMNALVESCVKFSEASASVSPGDDGMNLLATVAAGEISRSENVSPLASPERKSSAADESSSGNVSKLKHPGEITANSVAQSDGGASAEPHLKAVEPVQFKNDSRYPVTTTSRGSSGDEAVSSSCKEKTGDDRAQMNVSTTDLSQNTESPRVQPETVESASETVILSKKETREEPGSENHFHVQRDLGSQWAKHSSSDSKKEMVDHLDEAIVKNDEMLVSKETITSLKIEKELGEKLLKLSSDVGKDNKISAEVTGISVQKSSSVADSCESLDFKKVDVTPPSASGNSLMASRDEHANEMKVASNNPDEKQMDPQPTALPDVSGCSKDISSLKEVLGQCAGSSNPPELSKVTAKENAVSKTSEGNLVGKDSDVAGEHSTQPSLPVAGSDAGVILDFDLNEGFAVDDANHGEIVRQEEHITSSAVHNPCALPFPISSISGGFPATITVASAAKGPVIPPENPLRTKGELGWKGSAATSAFRPAEPRKNSDTPSTTGDIHSVDSTPSKQGRAPLDFDLNVPDERSFEDVGSHGSLESGPPDRTTMGLDLDLNRVDETPDAAPFSMSKLDFSTLPSKPSLSGVLSNGGNVSRDFDLNNGPGLDEVSTEVPARSQQMKNSAPFPSAIHGARTNNAEYGNYSSWFPPGNSYSAITVPPLLPGRGEQSYVAATGAQRIMGPTGSAAFGPELYRGPVLSSAPAVAYPPTAPFPYPGGFPFETSFPLSSNSFSVGSAAFIDSSTVGGLCFPTMPSQPVPPGGVVSSTYPRPYVMSLPGGTSNVIPDNRKWGSQSLDLNSGPGGTDTDRREEHMKMFQVAGVMKRKEPDGGWDGADRFSYKQPSWQ 1570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 185 213 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 693 707 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 1508 1526 - -
Stsc182534g00004 1570 ProSiteProfiles BAH domain profile. 37 151 IPR001025 GO:0003682
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 1071 1119 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 1071 1099 - -
Stsc182534g00004 1570 Pfam TFIIS helical bundle-like domain 351 400 IPR017923 -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 836 856 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 1528 1558 - -
Stsc182534g00004 1570 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 268 404 IPR035441 -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 432 628 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 1508 1570 - -
Stsc182534g00004 1570 SMART TFS2_5 323 402 IPR003617 GO:0005634
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 773 801 - -
Stsc182534g00004 1570 SMART BAH_4 37 151 IPR001025 GO:0003682
Stsc182534g00004 1570 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 306 414 IPR035441 -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 404 634 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 708 727 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 1010 1031 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 214 230 - -
Stsc182534g00004 1570 ProSiteProfiles TFIIS N-terminal domain profile. 324 403 IPR017923 -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 867 896 - -
Stsc182534g00004 1570 Gene3D - 21 241 IPR043151 -
Stsc182534g00004 1570 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1570 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 174 230 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 676 727 - -
Stsc182534g00004 1570 CDD TFIIS_I 359 401 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 1219 1239 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 773 896 - -
Stsc182534g00004 1570 MobiDBLite consensus disorder prediction 1191 1277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182534g00004 Stsc-Chr182534 5969 14162 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc182534g00004 Med26 5.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182534g00004 - - gmx:112998769 2058.49