Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182534g00003 ATGCATGGGGCAGCGCAGTCGGGAGGCCGTTCTCCAAAACTTTTGAATGGTCCGACATCAACACAATCATTGAAATCTGGTTCTGATAGTGTTCAAAATAGTTCTTCCTTTGGTACACAGGTTAAAGGGAAAAAGAGAGAAAGGGGTGATCTGGGTTCTGATTCATCCAAAAGAGAGCGGTTATTTAAAGCAGAAGATGGTGATTTTGGCACAGTTAGATCTGAGATCATGTTGAAGACAGAGATAAGTAAAATTACTGACAAAGGTGGGCTTGTAGACTTTGAAGGAGTTGAAAGACTTGTACAGCTCATGCAACCTGACAGTGCTGATAAAAAAATCGATTTGGGTGGGAGAATAATCCTTGTTAATGTAATAGCAGCAACAGAGCGTGATGACTGTCTTGGCTGGTTTGTACAGCTCAGGGGTTTGCCTGTGTTGGATGAATGGCTCCAGGAGGTCCACAAGGGGAAAAATGGGGACAGTAATACCCTTAAAGAAGGCGATAAATCAGTGGAGGAATTTTTGTTGGCCTTACTTCGTGCATTGGATAGGCTTCCTGTTAACCTTCATGCATTACAAACATGCAATGTTGGGAAGTCTGTTAATCATTTACGCACTCACAAAAATTCTGAAATTCAGAGGAAAGCTAGGAGTTTGGTAGACACATGGAAGAAACGTGTTGAGGCTGAAATGAATATGACTGATTCAAAAGCTGGTTCTACACGTCCTGTGTCTTGGCAAGCAAAGCCAGCAGCTTCTGAGGTCTCTCATGTTGGAAGTAAGAAAACTGGAGTATCTGAGAATTCTGCAAAAGGATCTGCAATTCAACCGTCAGTATCTAAAAATTCTTTGGCTAGGCATGGATCGGGGGAAGCAATGTCGAAATCTTCAGCTCCTAGTTCAATTAAATTGATGACTAACTCTGCGGGTTGTACCTCTAAAGATCAGAATCTTAAGGCGGTAGCATCAGATCAACCACTGACACCTATCAAGGAGGAAAGGAGCAGCAGTTCTAGTCAGTCCCAAAACAACAGCTTATCTTGTTCTAGTGAACATGCAAAAACAATTGGGTCTTGTAGGGAGGATTCGAGGAGTTCTACTGCCGTGTCAATGAGTGTGAGCAAAATTGCAGGTGGTACATCTCGAACTCGGAAGTCAAGCAATGGTTTACATGGGACTAGTGTTGCGCTTTCTCAGAAGGAGCCCACCTCAGGAAGAAGCTCTGCTAGAAATTCACCTTCTGAAAAAGTTTCACCAACTCGAGTGTCCCAGGAAAAATCTTCTGATCTGCCACTTACTGATCAGGGGAATAATCAACGCCTTATTCTCAGGTTGCCAAATACTGCCCGTAGTCCTTCTAGGAGTGCTAGTGGTGCTGCTTTTGAGGAACCTGCCATTCCTTGTGGCATAGCTTTGCCTTCTGCTGACAAGAATGAATCTCGGGATAGAAGAGTTAAAGCTAAGAATGATGGTTTGCATACCATTGTTTCATCTGTGATAACTGATGCCTCTGCTACTAATGAAGCTTCAACTGGTGGTGAGGATGGTAAGGTCTCTCCAGTAGCTGATGAACAGGGAAGGGTTAATGAAGATGGTGATCAGGTACCAGAAACGTCGAAACAAACTAATTCGTCACCGGGGTTTATCCCTAGATCAGGGCAGACTTTTGCTGCTTCTTTAAGTCCTATGAATGCATTAGTTGAAAGCTGTGTGAAATTTTCTGAAGCAAGCGCCTCTGTCTCTCCCGGAGATGATGGGATGAACTTACTTGCTACTGTAGCTGCAGGGGAGATATCCAGATCTGAAAATGTCTCTCCTCTGGCTTCACCTGAGAGGAAGTCTTCTGCTGCAGATGAGTCTAGCTCAGGCAATGTTTCCAAGTTAAAGCATCCAGGTGAAATCACTGCTAACTCTGTTGCACAATCTGATGGAGGGGCTTCAGCAGAGCCTCACTTGAAAGCTGTTGAGCCAGTGCAATTTAAAAATGATTCAAGGTACCCTGTGACAACGACATCGCGTGGTTCTTCTGGAGATGAAGCCGTTTCATCCAGTTGTAAAGAGAAAACTGGTGATGACAGAGCTCAAATGAATGTGTCCACTACAGATTTGTCGCAAAATACTGAATCTCCACGTGTACAGCCTGAAACTGTTGAGAGTGCTTCTGAAACTGTAATATTATCTAAAAAGGAGACTCGAGAAGAGCCAGGAAGTGAGAACCATTTTCATGTGCAGAGGGATTTGGGAAGTCAGTGGGCTAAACACAGCAGTTCAGACTCTAAAAAGGAGATGGTTGACCACTTGGATGAGGCAATTGTGAAGAATGACGAAATGTTAGTTTCCAAAGAGACCATTACAAGTCTAAAGATTGAAAAGGAGTTAGGAGAAAAGTTACTCAAGTTATCTTCAGATGTAGGTAAGGATAACAAGATTAGTGCGGAGGTTACTGGTATATCAGTGCAAAAGTCGTCATCAGTTGCAGATAGCTGCGAGTCTCTAGATTTTAAAAAGGTGGATGTGACTCCGCCTTCTGCTTCGGGTAATTCTTTGATGGCTTCCAGGGATGAGCATGCAAATGAGATGAAGGTGGCTTCCAACAATCCTGACGAAAAACAGATGGATCCACAGCCAACAGCTCTTCCTGATGTTAGTGGATGCAGCAAAGATATTTCAAGTCTGAAGGAGGTTCTTGGTCAATGTGCTGGTTCATCAAATCCCCCAGAGTTGTCCAAAGTTACTGCAAAAGAAAATGCAGTGTCAAAAACTTCTGAGGGTAACTTAGTTGGAAAGGACTCTGATGTTGCTGGTGAGCACAGTACCCAACCATCCCTACCTGTTGCTGGGTCTGATGCAGGTGTAATATTAGACTTCGATCTAAATGAGGGCTTTGCTGTTGATGATGCTAACCATGGGGAGATTGTTAGGCAGGAGGAACATATCACATCATCTGCAGTCCATAATCCTTGTGCATTGCCTTTTCCCATTTCATCCATCTCTGGGGGTTTCCCTGCAACAATTACAGTGGCATCTGCTGCCAAGGGACCAGTTATTCCACCAGAAAACCCATTGCGCACTAAGGGTGAACTTGGATGGAAAGGCTCTGCTGCTACCAGTGCCTTCCGGCCAGCTGAACCTAGAAAAAATTCAGACACACCATCAACTACTGGTGATATTCATTCTGTTGATTCCACACCATCAAAACAAGGCCGAGCTCCTTTAGATTTTGATTTGAATGTTCCGGATGAAAGAAGTTTTGAAGATGTTGGTTCACATGGTTCTTTAGAATCTGGGCCCCCTGATCGCACCACAATGGGACTCGATCTTGATTTGAACAGAGTTGATGAAACTCCCGATGCTGCTCCTTTCTCTATGAGTAAACTGGATTTTTCTACATTGCCAAGTAAGCCTTCACTGTCTGGGGTGTTATCTAATGGTGGAAATGTGTCAAGAGACTTCGATTTGAATAATGGACCAGGCCTTGATGAAGTTAGCACTGAAGTCCCAGCTCGAAGTCAGCAGATGAAAAATAGTGCACCATTTCCATCTGCTATCCATGGTGCAAGAACCAACAATGCTGAATATGGGAATTATTCATCATGGTTTCCCCCAGGAAATTCTTATTCTGCAATTACTGTCCCTCCACTTCTTCCTGGTAGAGGTGAACAGAGTTATGTTGCAGCTACTGGGGCACAGCGGATAATGGGACCCACAGGTAGTGCAGCCTTTGGTCCTGAGCTCTACCGGGGGCCAGTGCTTTCATCTGCTCCTGCAGTTGCTTACCCTCCTACCGCACCCTTTCCATATCCAGGAGGGTTTCCATTTGAGACTAGTTTTCCATTGTCTTCAAACTCCTTTTCTGTTGGTTCAGCAGCATTTATTGATTCATCAACAGTTGGTGGACTTTGCTTTCCTACCATGCCATCGCAGCCAGTTCCACCTGGTGGTGTTGTCTCATCAACATATCCACGTCCATATGTCATGAGTCTTCCTGGGGGTACAAGTAATGTGATTCCTGACAACCGAAAATGGGGAAGTCAGAGTCTGGATCTTAATTCAGGCCCTGGTGGTACAGATACAGACCGGAGAGAGGAACATATGAAGATGTTTCAGGTGGCAGGTGTTATGAAGAGAAAAGAACCTGACGGTGGTTGGGATGGAGCTGATAGATTCAGCTACAAGCAGCCCTCATGGCAGTAG 4194 0.4449 MHGAAQSGGRSPKLLNGPTSTQSLKSGSDSVQNSSSFGTQVKGKKRERGDLGSDSSKRERLFKAEDGDFGTVRSEIMLKTEISKITDKGGLVDFEGVERLVQLMQPDSADKKIDLGGRIILVNVIAATERDDCLGWFVQLRGLPVLDEWLQEVHKGKNGDSNTLKEGDKSVEEFLLALLRALDRLPVNLHALQTCNVGKSVNHLRTHKNSEIQRKARSLVDTWKKRVEAEMNMTDSKAGSTRPVSWQAKPAASEVSHVGSKKTGVSENSAKGSAIQPSVSKNSLARHGSGEAMSKSSAPSSIKLMTNSAGCTSKDQNLKAVASDQPLTPIKEERSSSSSQSQNNSLSCSSEHAKTIGSCREDSRSSTAVSMSVSKIAGGTSRTRKSSNGLHGTSVALSQKEPTSGRSSARNSPSEKVSPTRVSQEKSSDLPLTDQGNNQRLILRLPNTARSPSRSASGAAFEEPAIPCGIALPSADKNESRDRRVKAKNDGLHTIVSSVITDASATNEASTGGEDGKVSPVADEQGRVNEDGDQVPETSKQTNSSPGFIPRSGQTFAASLSPMNALVESCVKFSEASASVSPGDDGMNLLATVAAGEISRSENVSPLASPERKSSAADESSSGNVSKLKHPGEITANSVAQSDGGASAEPHLKAVEPVQFKNDSRYPVTTTSRGSSGDEAVSSSCKEKTGDDRAQMNVSTTDLSQNTESPRVQPETVESASETVILSKKETREEPGSENHFHVQRDLGSQWAKHSSSDSKKEMVDHLDEAIVKNDEMLVSKETITSLKIEKELGEKLLKLSSDVGKDNKISAEVTGISVQKSSSVADSCESLDFKKVDVTPPSASGNSLMASRDEHANEMKVASNNPDEKQMDPQPTALPDVSGCSKDISSLKEVLGQCAGSSNPPELSKVTAKENAVSKTSEGNLVGKDSDVAGEHSTQPSLPVAGSDAGVILDFDLNEGFAVDDANHGEIVRQEEHITSSAVHNPCALPFPISSISGGFPATITVASAAKGPVIPPENPLRTKGELGWKGSAATSAFRPAEPRKNSDTPSTTGDIHSVDSTPSKQGRAPLDFDLNVPDERSFEDVGSHGSLESGPPDRTTMGLDLDLNRVDETPDAAPFSMSKLDFSTLPSKPSLSGVLSNGGNVSRDFDLNNGPGLDEVSTEVPARSQQMKNSAPFPSAIHGARTNNAEYGNYSSWFPPGNSYSAITVPPLLPGRGEQSYVAATGAQRIMGPTGSAAFGPELYRGPVLSSAPAVAYPPTAPFPYPGGFPFETSFPLSSNSFSVGSAAFIDSSTVGGLCFPTMPSQPVPPGGVVSSTYPRPYVMSLPGGTSNVIPDNRKWGSQSLDLNSGPGGTDTDRREEHMKMFQVAGVMKRKEPDGGWDGADRFSYKQPSWQ 1397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 12 40 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 520 534 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 1335 1353 - -
Stsc182534g00003 1397 Pfam TFIIS helical bundle-like domain 178 227 IPR017923 -
Stsc182534g00003 1397 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 241 IPR035441 -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 898 946 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 503 554 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 1046 1066 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 600 723 - -
Stsc182534g00003 1397 SMART TFS2_5 150 229 IPR003617 GO:0005634
Stsc182534g00003 1397 ProSiteProfiles TFIIS N-terminal domain profile. 151 230 IPR017923 -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 898 926 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 1 57 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 259 455 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 837 858 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 41 57 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 694 723 - -
Stsc182534g00003 1397 CDD TFIIS_I 186 228 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 535 554 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 1018 1104 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 231 461 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 1335 1397 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 663 683 - -
Stsc182534g00003 1397 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 95 231 IPR035441 -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 600 628 - -
Stsc182534g00003 1397 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1397 - -
Stsc182534g00003 1397 MobiDBLite consensus disorder prediction 1355 1385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182534g00003 Stsc-Chr182534 5969 14162 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc182534g00003 Med26 4.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182534g00003 - - gmx:112998769 1776.91