Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182530g00001 ATGGAGCTCTATTATGATGATAATGACCATGATTTCTTGCAAGAATTAATGGCTCTAAGAAGAGAAACCTTGGAAACCAACACCAACAACAACAACCACTTCTTCTCCAACAACGGCGGCTGCAGCAGCAGCACTTTTGATTGTTATTATTACGATCAAAACTCGCTATCTTTTCCTCCAAACTCTTCTTCTTACCATGAAGATCTTTCTCTTCTTCCTCATGATGATCAAATAATTTACAATGACAACAACAACATCTTCAGTGAAATATATGATGATTCGTTGTTGTTTGATGAACAATCCCCGCCACTGATAATGGATCATCAGCAGCAGCATTCTTCCTACACCAGCAGCAACCTTGATACTCCTCCGTTTCTCGCTCAAGAAGATTGTTGTTACCCTCCATTGTCTTTGATGGAAGAAGAGGAGTACAATAATAATTATAACAATGGATTGTTTCTTGAAGAGGAGCTTCAGAATTTGTTGGAGATTCAAACCACAAAGTGCAAAGTGGAGCCTTCAGTAATAGCTTGTGATGATTCTCAATCCCCTACTGCTGCGATTTTCAACACAGATTCTGTTAGAAAGAACAAGTCAACAAAGAAGGTTCTAGGTCAACCCTCCAAGAATCTAATGGCGGAAAGAAGAAGAAGAAAGAGACTCAATGATAGACTCTCAATGCTAAGAGCCATTGTCCCCAAGATTAGTAAGATGGACAGAACATCAATACTTGGAGACACCATTGATTACATGAAAGAGCTTCTAGAGAAGATCAACGCTTTACAACAACAAGTGGTAAAGGTTGAGGATTCAAATTTCAAAGATGTGAAGCGACCAAATGAAATCTTGATTAGAAATTCACCAAAGTTTGAGGTTGAGAGGGGTGTGGATAATAATACAAGGGTTGAGATTTGCTGTGCGGGGAAGCCGGGGTTGTTGCTATCAACAATTAACACCATGGAAGCATTAGGACTTGAGATTCAGCAATGTGTTATAAGCTGTTTCAATGATTTCACAATGCAGGTTTCTTGCACAGAGGAAATGGAGCAAAGGGCAATGGTGAGTTCTGAAGATATAAAGCAAGCTTTATTTTCAAGTGCTGGGTATGGAGGAAGATGTTTGTGA 1125 0.3938 MELYYDDNDHDFLQELMALRRETLETNTNNNNHFFSNNGGCSSSTFDCYYYDQNSLSFPPNSSSYHEDLSLLPHDDQIIYNDNNNIFSEIYDDSLLFDEQSPPLIMDHQQQHSSYTSSNLDTPPFLAQEDCCYPPLSLMEEEEYNNNYNNGLFLEEELQNLLEIQTTKCKVEPSVIACDDSQSPTAAIFNTDSVRKNKSTKKVLGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINALQQQVVKVEDSNFKDVKRPNEILIRNSPKFEVERGVDNNTRVEICCAGKPGLLLSTINTMEALGLEIQQCVISCFNDFTMQVSCTEEMEQRAMVSSEDIKQALFSSAGYGGRCL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182530g00001 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 267 IPR036638 GO:0046983
Stsc182530g00001 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 254 IPR011598 GO:0046983
Stsc182530g00001 374 Gene3D - 196 272 IPR036638 GO:0046983
Stsc182530g00001 374 Coils Coil 251 271 - -
Stsc182530g00001 374 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 104 368 - -
Stsc182530g00001 374 SMART finulus 211 260 IPR011598 GO:0046983
Stsc182530g00001 374 Pfam Helix-loop-helix DNA-binding domain 211 254 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182530g00001 Stsc-Chr182530 6609 8471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182530g00001 124 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 51.953 1.21e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc182530g00001 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182530g00001 - - gmx:100784380 342.043