Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182521g00001 ATGGGTTTTCCGGTGGGTTACACGGAGGTTTTCTTCCCTCACCTCTTCCTCCGCCTACTCACCTTCCTCGGCCTCCTCCGCAACCTCATCTTCCACCTCTTCCGCCTCCTCGGACTCTCCGAACTCCTCATCGACACCACCACCGACAACACCACCACCAACCACCACCACCACCTTGTCTCCTCCGATCCCAACCACCCTGCAACAACCCGACCCCCCTCCGCCACACCCTCCCTCTCCGCCATCCTCATCCGCGAGTTCCTCCCCGTCGTAACGTTCCGAGAAATCCTCGTAACTAACAGTAGTGATGACGTGGCAGCATCGCCTCAACTAACTACTGGCAGCTGCGCGGTTTGCCTAACAGAATTAGTTATGGAGGACGAGATCCGGTGGTTACGAAACTGCAAGCACGTGTTTCACAGGGAGTGTGTGGACCGTTGGATTGATCACGATCAGAAGACGTGTCCGCTTTGTAGGACGTCGTTCGTTCCTGATGAAATGGTTGATCAGTATAATCAACGGTTGTGGGCTGCTTCTGGTCTTAGTGAGTTCTACGTAGATTACACTTCTTCTCTCTGA 579 0.544 MGFPVGYTEVFFPHLFLRLLTFLGLLRNLIFHLFRLLGLSELLIDTTTDNTTTNHHHHLVSSDPNHPATTRPPSATPSLSAILIREFLPVVTFREILVTNSSDDVAASPQLTTGSCAVCLTELVMEDEIRWLRNCKHVFHRECVDRWIDHDQKTCPLCRTSFVPDEMVDQYNQRLWAASGLSEFYVDYTSSL 192
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc182521g00001 192 ProSiteProfiles Zinc finger RING-type profile. 116 159 IPR001841 -
Stsc182521g00001 192 Pfam Ring finger domain 115 159 IPR001841 -
Stsc182521g00001 192 SUPERFAMILY RING/U-box 94 165 - -
Stsc182521g00001 192 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 179 - -
Stsc182521g00001 192 SMART ring_2 116 158 IPR001841 -
Stsc182521g00001 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 166 IPR013083 -
Stsc182521g00001 192 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc182521g00001 Stsc-Chr182521 8998 10032 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182521g00001 1 191 C3H Transcription Factor Family AT1G63840 42.784 2.39e-44 143
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182521g00001 K16281 - gmx:100500261 192.586