Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182509g00003 ATGGCGACCTACGATCTCACTCCTCGGATAGCTCCGAATCTTGACAGGCACCTTGTGTTCCCTCTTCTGGAGTTCCTTCAGGAGCGCCAGCTTTACAACGATAATGACATCCTCAAGGCCAAGATCGAGCTCCTCAACAACACTAACATGGTTGACTACGCCATGGACATCCACAAGAGCCTCTACCACACCGAAGAAGTTCCTCAAGATATGGTGGAGAGGAGGGCGGAAGTTGTGGCAAGGCTGAAGTCGCTGGAGGAGGCCGCGGCGCCGCTGGTGGCATTCCTTCAGAACCCGTCCGCCGTGCAGGAGTTGAGGGCTGATAAGCAGTATAACCTTCAGATGCTCAACGAAAGATACCAGATTGGTCCTGCACAAATAGAGGCATTATATCAATATGCCAAATTTCAATTTGAGTGTGGAAACTACTCTGGTGCTGCTGATTATCTTTATCA 455 0.5033 MATYDLTPRIAPNLDRHLVFPLLEFLQERQLYNDNDILKAKIELLNNTNMVDYAMDIHKSLYHTEEVPQDMVERRAEVVARLKSLEEAAAPLVAFLQNPSAVQELRADKQYNLQMLNERYQIGPAQIEALYQYAKFQFECGNYSGAADYLY 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182509g00003 151 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Stsc182509g00003 151 SMART eIF3_N_2 5 137 IPR019010 -
Stsc182509g00003 151 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 151 IPR016650 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182509g00003 Stsc-Chr182509 16368 17620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182509g00003 4 151 Eukaryotic Initiation Factors Gene Family AT3G57290 87.838 1.60e-91 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182509g00003 K03250 - aew:130773462 285.034