Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182508g00002 ATGGCAGAAGGACAAGGAGATGCTGAATTTATTCCAAACATGAATAGAGATAGTGTGGCAAGCAGTATACAATTAAATAATGTGGATTGTGGAATGGCTATGTGTGGAGTTTCTTCCCTTTGGAACGCACTCTCTTCTTACTTCCGCCTCTCTGCTTCGCGCTTTTCCTCACAGCTTTCACTCATTCGCTACTGCCGCCATCCTCAACCTTCTTCACATAGAAGAGTTTTGTGCTTAGATTGTGATTTTCTTAGTCTGAGGATGGGGAAGAAAAGCAAATTGAAGGAACATAGTGGCAAAGAGCATTGTTCCTCAACTCTTTTTGTATCCAATCTGCCATACTCTTTTTCCAACTCCCAGCTTGAGGAGACATTCAGTGAGATTGGACCTGTCAGGCGTTGCTTCATGGTCACTCAGAAGGGGTCAACCCAACATCGTGGTTTTGGTTATGTTCAATTTGCTGTCGAGGAAGATGCTAACCGTGCTATTGAACTGAAGAATGGTTCATCAGTTGGCGGCCGGAAAATTGCAGTGAAGCATGCAATGCCGCGTCCTCCCCGTGAAGAACGACAATCAAAACCAATTCAAGTTGGTAAGACAGAAGATGCCACAAAGTCAAAAAATGATGATAAAGATGGCAAAGATTCTGGAGAAGAAAAAGATGTTTCAATTTCAAAGGAAGAAGATGTACAAGTTTCAAATAAACAAAGAAGCTCAAAGAGGCCCATGGAAATGAGAAAAGCAACTCTTTGTAGTGATATAGCAGATGATGGAGGTGGCTCAGAAAAGCAGAGGGTCGCAAGAACTGTTATATTTGGTAGCCTCATAAATTCCGATATGGCTGAAGCTGTTCACTTTCAGGCCAAAGAGATTGGCACTGTGTGTTCTATTAAATACCCTCTTCCAAGGAAAGATATTGAACAGCAAGGTCTACTGCAAGATGGCTGTGCTCTTGATGCTTCAGCTGTAGTCTTTACAAGTGTAAAGTCAGCTCGAGCCGCTGTTATGGCATTACATAAAAAGGAGATCAAAGGGGGAACTGTTTGGGCACGGCAACTGGGTGGAGAGGGTTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCTGGTGAAAAGGAAATAAGGGATGTGTTTTCCTCTGCAGGTTTTGTGTGGGAAGTATTTATTCCACACAAGTCAGATACAGGGCTCTCCAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCGGAAAATGCCATTCAAAAGTTTAATGGATCAAAATTTGCAAAACGGATCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAATAGTGATACAAATGCCACTGAAAAAGAACAAGAGGCAAATGATGGAGATAGTAGTGCCACTGACGATGATGTTGAGCATATTGGTGACGATAAATCTGCTGATGACGATGATAGTGATGAAGACAACCCTAGTTCCATGGAGGAGGAAGGTGTTCCTCCTGAAGTTGATTTTGATACGGAAGCTGATCTTACCAGAAAGGTTCTTAACAACTTGATTTCATCCTCCACAAAAGTACCATCAACGCAGAATGATTCTATGTTGCCCAATGAAGATAGAGAGTCAGAGTCAGATGAAGATGGAGATAATAAAGGAAATAATGAGTCAGAAAAAGTTTCTGGTGTTTCTAATCCTGAAATTTCCAGCATAAACAATTTAGCAGATCCTAAGCAAACAGAAGATGATGATTTGCAGCGAACAGTTTTCATAAATAATCTTCCTTTTGATTGTGATAATGAGGAAGTGAAGGAACGGTTTTCTGGATTTGGGGAAGTAGAATATTTTGTTCCAGTTCTACACCAAGTCACCAAACGTCCAAGGGGAACTGGTTTTCTTAAGTTTAAAACCACAGAAGCAGCTAATGATGCAATCAAAGCATCAAGTGCAGCTTCATGTATTTTGCTGAAAGGTAGACCATTGAAAGTTTTGAAGGCTTTGGATAAGAAATCAGCCCATAACAAGGAACTCGAGAAGGCAAAGAATGAGGTTCATGATCATCGCAATCTTTACTTGGCAAAGGAAGGAGTCATTCTGGAGGGAACTCCAGCAGCCGAAGGAGTTTCAGCCAGTGATATGTTAAAACGCCAACAGTTAGAAAAGAAAAAGAAGACAAAGCTTCAGTCACCAAATTTTCATGTTTCAAGAACAAGACTTATCATTTACAATGTACCGAAGTCAATGTCTGAAAAAGAACTTAAGAAACTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTATGATTCGGCAGATTAAGTTCTTGAAAGATGTTAAGAAAGGAGGAAAGGTTGTCCAGGAACATTTTTCACGTGGAGTTGCTTTTGTTGAATTTTCAGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTCAACAATAATCCTGAAACTTTTGGTCCCGAACACCGGCCAATTGTGGAGTTTGCTCTGGATAATGTTCAGACGTTGAAACTCCGGAAGTCAAGGGAACAATTCCAAAAGCAAGCCTCTCGTGATGACATCAATGCTAGTGAAAATGGTGTATCCGGCAAAAAAGTTGACACACACATGAAAGACAGGAAACGGAAAACTCGGGAAAGTGGCAAACCAATGAATGATTTAGATACAAATGGTGAATCAGGTGTTACAGTGGCAAATGGGAACACCCCAGAAGGACTCAAATTCAAGAAACAGAAAGGCAAAAAAGGTAGAAGGGCTGAAGAATCATCTGAGAAAGATGCCCTGGCCATGAAACCAAAGAAAAACCAAGATGGCCGGAGCCATGTTCGTGCACAACCTGAAGGTCAAAACCCCTCTACTGACACCAAGAAAGCAACACCAGGGAACAAAGTAGATGTTGGTTCAAGAAAAAGGAAGATGCAAAACCAAGAACAAGGAGACCAAAAGGTTTCTAAGAAACGGCCTAAAAAGAATAAAGAATCAGTAGGGAAAGACGTGGTAGACAAGCTCGACATGCTTATAGAACAATATAGATCGAAGTTCTCACACAAAGGTTCCCAAGGGAATGACAGTGACAAAAAGCCTTCCAGACAGCTTAGAAAGTGGTTTGATGTATAG 3117 0.4119 MAEGQGDAEFIPNMNRDSVASSIQLNNVDCGMAMCGVSSLWNALSSYFRLSASRFSSQLSLIRYCRHPQPSSHRRVLCLDCDFLSLRMGKKSKLKEHSGKEHCSSTLFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTQKGSTQHRGFGYVQFAVEEDANRAIELKNGSSVGGRKIAVKHAMPRPPREERQSKPIQVGKTEDATKSKNDDKDGKDSGEEKDVSISKEEDVQVSNKQRSSKRPMEMRKATLCSDIADDGGGSEKQRVARTVIFGSLINSDMAEAVHFQAKEIGTVCSIKYPLPRKDIEQQGLLQDGCALDASAVVFTSVKSARAAVMALHKKEIKGGTVWARQLGGEGSKTQKWKLIVRNLPFKAGEKEIRDVFSSAGFVWEVFIPHKSDTGLSKGFAFVKFTCKQDAENAIQKFNGSKFAKRIIAVDWAVPKKIFNSDTNATEKEQEANDGDSSATDDDVEHIGDDKSADDDDSDEDNPSSMEEEGVPPEVDFDTEADLTRKVLNNLISSSTKVPSTQNDSMLPNEDRESESDEDGDNKGNNESEKVSGVSNPEISSINNLADPKQTEDDDLQRTVFINNLPFDCDNEEVKERFSGFGEVEYFVPVLHQVTKRPRGTGFLKFKTTEAANDAIKASSAASCILLKGRPLKVLKALDKKSAHNKELEKAKNEVHDHRNLYLAKEGVILEGTPAAEGVSASDMLKRQQLEKKKKTKLQSPNFHVSRTRLIIYNVPKSMSEKELKKLCIDAVISRATKQKPMIRQIKFLKDVKKGGKVVQEHFSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKSREQFQKQASRDDINASENGVSGKKVDTHMKDRKRKTRESGKPMNDLDTNGESGVTVANGNTPEGLKFKKQKGKKGRRAEESSEKDALAMKPKKNQDGRSHVRAQPEGQNPSTDTKKATPGNKVDVGSRKRKMQNQEQGDQKVSKKRPKKNKESVGKDVVDKLDMLIEQYRSKFSHKGSQGNDSDKKPSRQLRKWFDV 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 181 246 - -
Stsc182508g00002 1038 Gene3D - 350 477 IPR012677 -
Stsc182508g00002 1038 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Stsc182508g00002 1038 SUPERFAMILY RNA-binding domain, RBD 584 813 IPR035979 GO:0003676
Stsc182508g00002 1038 CDD RRM1_RBM28_like 106 184 - -
Stsc182508g00002 1038 CDD RRM2_RBM28_like 364 440 - -
Stsc182508g00002 1038 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 363 441 IPR000504 GO:0003723
Stsc182508g00002 1038 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 734 843 IPR000504 GO:0003723
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 842 1038 - -
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 942 959 - -
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 448 503 - -
Stsc182508g00002 1038 SUPERFAMILY RNA-binding domain, RBD 359 444 IPR035979 GO:0003676
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 864 885 - -
Stsc182508g00002 1038 CDD RRM4_RBM28_like 734 832 - -
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 448 473 - -
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 174 246 - -
Stsc182508g00002 1038 SUPERFAMILY RNA-binding domain, RBD 105 349 IPR035979 GO:0003676
Stsc182508g00002 1038 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 584 665 IPR000504 GO:0003723
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 915 941 - -
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 886 900 - -
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 474 502 - -
Stsc182508g00002 1038 Gene3D - 733 829 IPR012677 -
Stsc182508g00002 1038 SMART rrm1_1 364 437 IPR000504 GO:0003723
Stsc182508g00002 1038 SMART rrm1_1 735 827 IPR000504 GO:0003723
Stsc182508g00002 1038 SMART rrm1_1 585 661 IPR000504 GO:0003723
Stsc182508g00002 1038 SMART rrm1_1 106 179 IPR000504 GO:0003723
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 518 533 - -
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 553 573 - -
Stsc182508g00002 1038 FunFam - 89 216 - -
Stsc182508g00002 1038 Coils Coil 660 687 - -
Stsc182508g00002 1038 Gene3D - 519 679 IPR012677 -
Stsc182508g00002 1038 Gene3D - 83 196 IPR012677 -
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 1018 1038 - -
Stsc182508g00002 1038 FunFam RNA-binding motif protein 28 733 829 - -
Stsc182508g00002 1038 CDD RRM3_RBM28_like 584 663 - -
Stsc182508g00002 1038 PANTHER RNA-BINDING MOTIF PROTEIN 14B 102 1037 - -
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 963 1011 - -
Stsc182508g00002 1038 MobiDBLite consensus disorder prediction 518 579 - -
Stsc182508g00002 1038 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 586 644 IPR000504 GO:0003723
Stsc182508g00002 1038 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 365 432 IPR000504 GO:0003723
Stsc182508g00002 1038 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 176 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182508g00002 Stsc-Chr182508 2678 12555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182508g00002 367 442 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 1.83e-10 61.6