Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182507g00001 ATGTCGGACGCTGTGATCAATGGATTGGCCGGTGCTGGGGGAGGCATCATTTCTCAGCTCATAACATACCCTCTTCTAACTGTAAACACTCGCCAACAAACCGATCGTGATGTGAGAAAAAGCAAGACTAATTTTGGAACCCTCGAACAAATGTGCCAGGTTGTGAAGGAAGAAGGGTGGGAACGGTTGTATGGAGGGTTGATGCCTTCACTAGTTGGCACTGCTGCATCTCAGGGTGTTTATTATTATTTCTATCAAATATTCAGGAACAGAGCAGAAGAAGCTGCACTAACACAGAAAAAGATAGGCATCAGTGATGGATCAGTTGGGATGCTATCCTCTCTTTTCATTGCTGCTTTATCTGGGTCTCTTAACGTGCTTTTGACGAACCCTATATGGGTCGTTGTCACCCGTATGCAGACACAAAGAAAAGATTCGAATAAAACAGGTCCTGATATGGAATTGTTAGTTGTTGGTGGTGAGAAAAGTCTTCCTCCTCCTGCAGATAAGCCTCTTTCTTATGACACTAAACATGTGATACAAGAAGTCTATGAAGAAGGTGGAATCGGTGGTTTCTGGAACGGTGTGTTACCGTCATTGATCATGGTATGCAACCCTTCCATTCAATTCATGCTGTATGAAACCATGTTGATAAAGATGAAAAAAAGACCTGATAAGAAGGGTAGCAATGGGGTAACTGCTTTCGAGGTGTTTCTTCTTGGAGCTTTGGCTAAGCTTGGAGCTACTGTTGTAACTTATCCTCTTCTGGTTCTGAAGTCAAGGCTTCAAGCTAAACAGGATAAAACAGGGGACATCAGACACCGTTATAAAGGGACATGGGATGCAGTTATAAAGATGATAAACTATGAAGGGCTCTATGGATTCTACAAAGGCATAGGCACCAAAATTGTACAGAGTGTTCTTGCTGCTGCAATTTTGTTCATGATGAAGGAAGAACTAGTTAAGGGTGTTCAATCTTTGCTAGCTAAGGATGGCTCTAATGCCGTAAAGAGAAAGCAATTATGA 1026 0.424 MSDAVINGLAGAGGGIISQLITYPLLTVNTRQQTDRDVRKSKTNFGTLEQMCQVVKEEGWERLYGGLMPSLVGTAASQGVYYYFYQIFRNRAEEAALTQKKIGISDGSVGMLSSLFIAALSGSLNVLLTNPIWVVVTRMQTQRKDSNKTGPDMELLVVGGEKSLPPPADKPLSYDTKHVIQEVYEEGGIGGFWNGVLPSLIMVCNPSIQFMLYETMLIKMKKRPDKKGSNGVTAFEVFLLGALAKLGATVVTYPLLVLKSRLQAKQDKTGDIRHRYKGTWDAVIKMINYEGLYGFYKGIGTKIVQSVLAAAILFMMKEELVKGVQSLLAKDGSNAVKRKQL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182507g00001 341 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 328 IPR044712 GO:0006862|GO:0055085
Stsc182507g00001 341 Pfam Mitochondrial carrier protein 233 322 IPR018108 -
Stsc182507g00001 341 Pfam Mitochondrial carrier protein 6 90 IPR018108 -
Stsc182507g00001 341 Pfam Mitochondrial carrier protein 109 221 IPR018108 -
Stsc182507g00001 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 219 IPR018108 -
Stsc182507g00001 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 91 IPR018108 -
Stsc182507g00001 341 Gene3D Mitochondrial carrier domain 3 325 IPR023395 -
Stsc182507g00001 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 232 323 IPR018108 -
Stsc182507g00001 341 SUPERFAMILY Mitochondrial carrier 3 319 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182507g00001 Stsc-Chr182507 6680 11000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182507g00001 53 340 Chloroplast and Mitochondria Gene Families AT1G25380 25.694 1.43e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182507g00001 K13354 - gmx:100775784 489.574