Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182506g00001 ATGGAGGTTCATTCTCTGCGATGCTTCGTCTCCCTCTGCGTTCTGCTTGCGCTGCTGCTTTCTATTGGCGCCAATGCAAGAAACTACAACGAGAAAAGGATCACGGAATCAAGCGATGTAGGAGAAGTGAATTTGCAGAGCTTGGAGAATTCGCCAATGGCGGAAAGGTCAGGTAATGATGATTCTTCAAATGTGCATGCAGTTGACAATCCAGAGGAGATAGTTTCCATGGTTGACATGAGTATCCGCAATCACACGGCAAGGAGGAATCTGAACTTCTTCTCATCATGTGGGACCGGGAACCCTATCGACGACTGCTGGCGCTGCGACGATCGCTGGTACCTCCGACGCAAGCGCCTCGCCACCTGCGCCATCGGCTTTGGTCACAATGCCATCGGAGGTCGTGACGGCCGCTACTACGTTGTCACAGACCCGTCCGACGATGACGCCGTGAACCCGAAGCCCGGCACCCTCCGCTATGGCGTGATCCAAGACAGGCCCCTGTGGATCGTGTTCAAGCGCGACATGGTGATCACACTGAAGCAAGAGCTCATCATGAACAGCTTCAAGACAATCGACGGCCGCGGCGTCAACGTCCATATCGCCCACGGTGCCTGCATCACCGTCCAGTACGTCACCAATATTATCATCCACGGCATCCACATCCACGACTGCATCCAAACCGGCGACGCCATGGTTCGCAGCTCCCCTTCGCATTACGGCTGGAGAACCCTCGCTGACGGCGACGGCATCTCTATCTTCGGCGCCAGCCATATCTGGATCGACCATAACTCCATTTCTAATTGCTCTGATGGCCTTATTGATGCCATTATGGGGTCTACTGCCATTACAATTTCTAACAACTACTTCACTCACCACGATGAGGTTATGTTACTGGGCCATCATGATTCTTATGTACGAGACAAGCAGATGCAAGTCACTATTGCTTATAACCATTTTGGGGAGGGTCTAGTCCAAAGGATGCCAAGGTGTAGACATGGATATTTCCACGTGGTGAACAATGATTATACCCATTGGGAAATGTATGCAATTGGTGGCAGTGCTGATCCCACAATTAACAGCCAAGGCAATAGATTCCTTGCCCCTATGGGTCCTTTTGCTAAGGAGGTGACAAAGAGAGTGTTAAAAGATGAATCCACATGGAAAAATTGGAATTGGAGGTCTGATGGAGACCTTATGTTGAATGGTGCGTATTTTACTTCATCAGGAGCAGCAAATGCAGCTAGCTATGCTAGAGCTTCAAGTTTGTCTGCCAAATCTTCTTCTTTGGTTGGAACTATTACCTCTACTGCTGGTGTTCTTAACTGCCGCAGGGGCGCCATATGTTAA 1350 0.5015 MEVHSLRCFVSLCVLLALLLSIGANARNYNEKRITESSDVGEVNLQSLENSPMAERSGNDDSSNVHAVDNPEEIVSMVDMSIRNHTARRNLNFFSSCGTGNPIDDCWRCDDRWYLRRKRLATCAIGFGHNAIGGRDGRYYVVTDPSDDDAVNPKPGTLRYGVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAHGACITVQYVTNIIIHGIHIHDCIQTGDAMVRSSPSHYGWRTLADGDGISIFGASHIWIDHNSISNCSDGLIDAIMGSTAITISNNYFTHHDEVMLLGHHDSYVRDKQMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFLAPMGPFAKEVTKRVLKDESTWKNWNWRSDGDLMLNGAYFTSSGAANAASYARASSLSAKSSSLVGTITSTAGVLNCRRGAIC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182506g00001 449 FunFam Pectate lyase 100 442 - -
Stsc182506g00001 449 Gene3D - 100 442 IPR012334 -
Stsc182506g00001 449 SUPERFAMILY Pectin lyase-like 78 444 IPR011050 -
Stsc182506g00001 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Stsc182506g00001 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Stsc182506g00001 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Stsc182506g00001 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Stsc182506g00001 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Stsc182506g00001 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Stsc182506g00001 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Stsc182506g00001 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Stsc182506g00001 449 PANTHER PECTATE LYASE 18-RELATED 69 446 IPR045032 GO:0030570
Stsc182506g00001 449 Pfam Pectate lyase 184 366 IPR002022 -
Stsc182506g00001 449 SMART amb_all 175 372 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182506g00001 Stsc-Chr182506 3177 9766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182506g00001 29 449 Polysaccharide Lyase AT4G13710 71.663 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182506g00001 K01728 - gmx:100809277 714.146