Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182494g00001 ATGCACAGCTTCTCCTCTCTCCCTGGGTGGATTGCTAGACTATTCAATTCTCCTCCCTCAAATTCAAGCGGCGCCAACGGAGGAGATAGTACTATCAGCGATCCTGTGGCTGATGACAATGGACCGGTGGAGTGTTATGCCTGCACGCAAGTAGGCGTGCCGGTGTTCCACTCCACCAGCTGTGACAGTTTTCATCAGCCACAATGGGAGGCTTGTGCGGGATCCTCCCTTGTCCCGATCCAGAATCGGTCCGGAAAGGCTCCGACTGTCCGGACAAGAATCCAGACACAGTCAGGGCCATTCGGACAGGTTCTGGATCCGAGGAGCAAGCGTGTGCAAGTATGGAACCGGGCACTATTGCTAGCGCGTGGAGTGGCGCTGGCAATAGACCCGCTGTTCTTCTACGCGCTCTCCATCGGGAGAGGAGGGTCGCCGTGCCTGTACATGGACGGAGGACTGGCGGCAATTGTGACGGTGGCGCGAACGTGCGTGGACGCGGTGCATCTGCTTCACGTGTGGCTGCAGTTCAAGGTGGCGTATGTTTCGAAAGAGTCGATGGTTGTCGGGTGCGGGAAGCTTGTGTGGGACGCGCGTGCAATCGCGTCACACTACCTGCGATCGATGAAGGGGTTTTGGTTTGATGCCTTTGTGATCCTCCCAGTACCGCAGTTTCTCCCTAAGGTTTACCACAGCATCTGCATGATGAAAAGAATGCAGAAAGTCACAGGCTACATATTTGGCACCATTTGGTGGGGTTTTGGCCTTAATCTCATAGCATACTTCATTGCTTCACATGTAGCTGGAGGGTGCTGGTATGTTCTTGCAATTCAACGAGTGGCATCATGCCTCCAGCAACAATGTGATTCAACTATGGGATGCAACCTTTCTTTGGCATGCTCTGAGGAGGTATGCTACCAGTTTCTGTCATCATCATCAGGGACAGTGGGAGATGCTTGTAATAGAAATGGAAACTCATCAGCAGTTATGGTGAGAACACCTATGTGCTTAGATATTGATGGCCCTTTCAGATATGGAATCTACCAATGGGCACTTCCTGTCATATCAAGCAATTCCTTGGCTGTCAAGATTCTCTATCCCATTTTCTGGGGTTTGATGACACTCAGCACTTTTGGTAATGATCTTGAGCCAACAAGTAACTGGCTAGAAGTGATTTTCAGTATATGCATTGTACTCAGTGGATTACTGCTATTCACTTTGTTGATTGGTAACATTCAGGTGTTTTTGCATGCTGTGATGGCGAAGAAGAGAAAAATGCAGCTGAGGTGTCGAGACATGGAATGGTGGATGAGGAGGAGGCAGCTACCGTCACGATTAAGGCAAAGAGTTCGCCATTTCGAACGCCAGAGATGGGCAGCCATGGGAGGAGAAGATGAGATGGAATTGATCAAAGACTTGCCGGAGGGGCTAAGGCGAGACATCAAGCGCTATCTTTGCCTCGACCTTATAAAAAAGGTACCTCTTTTCCACAATTTGGATGATCTTATACTAGACAACATATGTGACAGGGTTAAGCCTCTAGTCTTCTCTAAAGATGAAAAGATAATTAGAGAAGGTGATCCTGTTCCGAGGATGGTGTTCATCGTCAGAGGACGAATAAAGCGCAACCAAAGCCTTAGCAAAGGCATGGTAGCTTCTAGCATCCTTGAACCAGGAGGCTTTTTAGGGGATGAGCTTCTTTCATGGTGCCTTAGGCGGCCGTTCATCGACCGCCTTCCGGCTTCCTCGGCCACATTTGTGTGCCTAGAACCAACAGAAGCCTTTGGCCTTGATTGCAAACACCTTAGGTACATCACTGATCACTTCAGATACAAGTTTGCCAATGAGAGGCTGAAGCGAACGGCGAGGTACTACTCGTCGAACTGGAGAACTTGGGCTGCTGTCAACATTCAATTCGCGTGGCGGCGTTACAGGCAGAGGACTAGAGGTCCGGTGACCCCTGTAAGGGAAAATGGTGGCGGCGGTGGCACGGAACGCAGGCTCTTGCAGTATGCTGCAATGTTCATGTCAATAAGGCCACATGACCATCTTGAATGA 2055 0.5002 MHSFSSLPGWIARLFNSPPSNSSGANGGDSTISDPVADDNGPVECYACTQVGVPVFHSTSCDSFHQPQWEACAGSSLVPIQNRSGKAPTVRTRIQTQSGPFGQVLDPRSKRVQVWNRALLLARGVALAIDPLFFYALSIGRGGSPCLYMDGGLAAIVTVARTCVDAVHLLHVWLQFKVAYVSKESMVVGCGKLVWDARAIASHYLRSMKGFWFDAFVILPVPQFLPKVYHSICMMKRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLQQQCDSTMGCNLSLACSEEVCYQFLSSSSGTVGDACNRNGNSSAVMVRTPMCLDIDGPFRYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMELIKDLPEGLRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREGDPVPRMVFIVRGRIKRNQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLEPTEAFGLDCKHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGPVTPVRENGGGGGTERRLLQYAAMFMSIRPHDHLE 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182494g00001 684 Gene3D Jelly Rolls 492 610 IPR014710 -
Stsc182494g00001 684 CDD CAP_ED 494 604 IPR000595 -
Stsc182494g00001 684 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 93 647 - -
Stsc182494g00001 684 ProSiteProfiles cAMP/cGMP binding motif profile. 494 573 IPR000595 -
Stsc182494g00001 684 SUPERFAMILY cAMP-binding domain-like 421 608 IPR018490 -
Stsc182494g00001 684 Gene3D Helix hairpin bin 420 485 - -
Stsc182494g00001 684 Pfam Ion transport protein 113 412 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc182494g00001 684 SUPERFAMILY Voltage-gated potassium channels 106 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182494g00001 Stsc-Chr182494 1188 6987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182494g00001 43 684 Ion Channels AT5G15410 76.106 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182494g00001 K05391 - gmx:100798823 1127.85