Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182492g00003 ATGTATCATGGAACCACCTTCAGTCTTCTCTACCTCCTGAGATTCTTTCTGTTCCAACCCTTCAAACCTTCATTGCTTCTCACAACAGCCTTGGAGGCAATTTCCCAGATGAGTTTCAGGACTGTCCATCTCTCTCTGTTTTGGATCTTTCAAACACCGAAATCTCTGGAAAAATCCCAGAAAGCATTGCTTCTTGNNNNNNNNNNGAGATTAGTCAACCTCAACCTTAGAAACAACCAATTGACAGGCGGAATCCCCAAATCAATCACAAACATGCCAACCTTATCTGTTCTTGACCTGTCCAACAATTCACTCATCGGTAAAATACCCGAAAATTTCGGTGTCTCCCCGGCTCTTGAAACACTGAACCTCTCCTACAACAAGCTCGAGGGTCCGGTACCATCAAATGGCATCTTAATGTCCATAAATCCTAATGATCTTGTAGGAAACCCTGGTCTTTGTGGCGGCATTCTCCCCACATGTTCCAAGAGTTTCACTTTCACAAACCATCAAACAGGTAGCAGGCACACCAAACACATCATCATCGGTTTTGCAACTGGCATTTCAGTGATCCTATCCATTGCTGCAGCATACTTAGCTGGCAGAATTATCTACAACAGAATCTACTTGTACAACAATTTCATCCATGACTTGTTCAAAAGCAGCCATGAAGATTGGCCATGGAGACTAGTAGCATTCCAAAGGGTGAGTTTCACAAGCACTGAGATCCTAACTTGCATAAAGGAGTCAAATGTCATAGGAATGGGAGCCACAGGCATTGTTTACAAAGCCGAAATCCGAAACAGACCGCACACGATGGTGGCGGTTAAGAAGCTATGGAGATCAGGATCAGACATAGAGAGTGGCAATAGTGATGTTGTAAGAGAAGTGGAGCTCTTAGGGAAGCTAAGGCACAGGAACATTGTGAGGCTATTGGGGTATGTGCATAATGAAAGAGATGTTATGATGGTTTATGAGTACATGGCTAATGGGAACTTGGGGAATGCACTGCATAATGGTGAACAATGTGAGAAGTTGCTTGTGGATTGGGTTTCAAGGTACAACATTGCTCTTGGTGTTGCTCAAGGCCTTCACTATCTTCACCATGATTGCCATCCACCTGTTATTCATAGGGATATTAAGTCCAATAACATACTTCTTGATGCGAATTTGCACGCTCGGATCGCGGATTTCGGCTTGGCCAAGATGATGATCCATAAGAATGAGACTGTTTCAATGGTGGCTGGATCATATGGATACATTGCACCAGAATATGGATACACCCTGAAGGTGGACGAGAAGATTGACATATACAGTTATGGTGTGGTGCTTTTGGAGCTCATAACTGGAAAAACGCCATTAGACCCTTCATTTGGAGAATGTGTGGACATAGTGGAGTGGATAAGAAAGAAGAGGAGCAACAAAGCACTGGAAGAAGCGCTAGACCCAACCATAGCTGGTCAGTGCAAGCATGTTCAAGAAGAGATGCTTCTTGTGCTGAGAATAGCACTGCTATGCACTGCAAAGCTTCCTAAGGAAAGGCCATCCATGAGGGATGTTATCACAATGCTCGGAGAGGCAAAGCCGAGGAGGAAGAGTGTCTGCCGCGATATCAGGGCCCAAGATGGTGCCATGGAAAAGCCAATATTTACTGCATGGCCTGTGGTAAGCCTTTTGTAG 1680 0.4435 MYHGTTFSLLYLLRFFLFQPFKPSLLLTTALEAISQMSFRTVHLSLFWIFQTPKSLEKSQKALLLXXXXRLVNLNLRNNQLTGGIPKSITNMPTLSVLDLSNNSLIGKIPENFGVSPALETLNLSYNKLEGPVPSNGILMSINPNDLVGNPGLCGGILPTCSKSFTFTNHQTGSRHTKHIIIGFATGISVILSIAAAYLAGRIIYNRIYLYNNFIHDLFKSSHEDWPWRLVAFQRVSFTSTEILTCIKESNVIGMGATGIVYKAEIRNRPHTMVAVKKLWRSGSDIESGNSDVVREVELLGKLRHRNIVRLLGYVHNERDVMMVYEYMANGNLGNALHNGEQCEKLLVDWVSRYNIALGVAQGLHYLHHDCHPPVIHRDIKSNNILLDANLHARIADFGLAKMMIHKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELITGKTPLDPSFGECVDIVEWIRKKRSNKALEEALDPTIAGQCKHVQEEMLLVLRIALLCTAKLPKERPSMRDVITMLGEAKPRRKSVCRDIRAQDGAMEKPIFTAWPVVSLL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182492g00003 559 Pfam Leucine rich repeat 70 129 IPR001611 GO:0005515
Stsc182492g00003 559 Gene3D Transferase(Phosphotransferase) domain 1 332 544 - -
Stsc182492g00003 559 ProSitePatterns Protein kinases ATP-binding region signature. 253 278 IPR017441 GO:0005524
Stsc182492g00003 559 ProSiteProfiles Protein kinase domain profile. 247 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182492g00003 559 Pfam Protein kinase domain 249 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182492g00003 559 SUPERFAMILY L domain-like 66 154 - -
Stsc182492g00003 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672|GO:0006468
Stsc182492g00003 559 Gene3D Phosphorylase Kinase; domain 1 246 331 - -
Stsc182492g00003 559 FunFam MDIS1-interacting receptor like kinase 1 332 542 - -
Stsc182492g00003 559 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 53 528 - -
Stsc182492g00003 559 FunFam MDIS1-interacting receptor like kinase 1 247 331 - -
Stsc182492g00003 559 Gene3D Ribonuclease Inhibitor 45 168 IPR032675 -
Stsc182492g00003 559 SUPERFAMILY Protein kinase-like (PK-like) 239 524 IPR011009 -
Stsc182492g00003 559 SMART serkin_6 247 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182492g00003 Stsc-Chr182492 12940 15890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182492g00003 70 559 Receptor kinase-like Gene Family AT1G08590 64.484 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc182492g00003 Pkinase 4.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182492g00003 - - gmx:100793873 780.785