Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182468g00004 ATGGCAATTGAGGAATTTGGAAGTTGGAGCGGCCATCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCAGATGGGAGCTCCATTGGTGGGTATCATAAGCCATGTATGTGCTGTGGAGATATCCTGCACTTGTCAGAATCCAAGTGTAAGTCATGCAACCATGGGACTACCACCGATGATGTTGAAGACTGGGTGTACCACCAGTTAGAGAACACGACGCATCTCTTGCATGGTGTAGTACATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGTGGATCTAGATATCTTTCTGGTTGCCACATCATGGACTTCTGGGATCGCTTATGCAAGACACTTGGAGTCAGAAAAGTTAGTGTGATGGATGTTTCAAAGAAATATGGGTTAGATTACCGCCTACTTCATACAATCACGAAGGGACATCCGTGGTATGGTGACTGGGGTTATGATTTTGGTTCTGGTAGCTATTGTCTCACACATGAAGCATACAAGTCTGCGGTTGACAACCTATCTAATATACCCTTGTCTACCTTCCTGTCACAACGACAAAATTATTCCCTCTCTCGTGTGCAGGGAATGATTTCATACTTCCAGTCTTTGTCAGACCATGAGCTTGTAAATATAAGGGACCTCTTTTGTTTTTTGATGGGTTTGATTCATGATGCTTGCAGTACTCCATCAAAGGTTGATGATGTGGCCTGCAAGAAGCGGCGTTTTAATGCTTCTGGAGTGTTGTGTTCTTGGGAGAAGAAGGATATTGAACGAGTGGAGGAAGCCATGCTGAAGGTGCTGCGTGCAGTTTCTGGGTCTAATTGGGTGAACTCTCGTGCTCTTAGGGGTGCTGTCTGCAAGTTGGCCTCTAAAGAGCTTCTTGATTATTGCCTTGGAGGACTCGGAGGAAAAGTGGTCTATGGTGGAATGGTTGTGAATGCCCGATGCAACCCTCAAACTGGAACTTTTGAATACAGGCTTGAGGCGGCAGATGGCTCTTCCTCTGGAATTATTGCAAACAACTCTTCAGGTTCAAAGTATCCATCCAAAGAGAATCTCCTACAGTGTTTGAGATATTTATATGAGGCTTTGCTTCACCCTCAGATGATGGTAAATTATGCCCCGGAAGGGACTAGGGTTCTTGCAATGAGTTCAGCTCAGAAGCTTCTTGATTGCAAGCAATTTGTGAAAGACTACACCCCTGGGGTATCGCCAATGTCAGACCTGCAAAAAATACGGATATCATGTCAGGTTGAACTGGTGGATGAAGCTGAAGATCCTGCAGCCAAAACTCCACCAGAATTGATTGTGCTGCCTGCAAATGCCACTGTTTCTGACGTCAAGATCGAAGCAGCAAATGCTTTCCAAGATGTATACCTGATGTTCAGAAGATTTCAGGTTGATGAGCTACTTGGCTATAGCGGTGTAGAAGATTCCACCCAGGTCAAGCACTTGTTAGGATCAGAAGAACCTGCCACAGTTTGTGTCCGCGGAAGGTGCATGGCGAAGAATGGGCTGAGCAAGTTCCGAATGGAAAGGGGACTCGAGCGGTGGACTGTAGATTGTAACTGTGGGGCTAAGGATGACGATGGGGAGAGAATGCTGGCTTGTGACATATGTGGAGTGTGGCGGCATACTAGGTGTTCTAACATCCGAGACATTGATCCTGTTCCGGCACGGTATGTTTGCCCAAAGTGCCAAAACTCGGACCCAAAGCCCAAGTCCAGTAGTGGGCACTGCAAAGAGGTGACAGTGACCAACGTTAGTGCTAGTGGTAGCTGCTTTGGAAATGGCTTGCCAGTGCATTCTGATGTTCGTTAG 1830 0.465 MAIEEFGSWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHGTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRYLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLDYRLLHTITKGHPWYGDWGYDFGSGSYCLTHEAYKSAVDNLSNIPLSTFLSQRQNYSLSRVQGMISYFQSLSDHELVNIRDLFCFLMGLIHDACSTPSKVDDVACKKRRFNASGVLCSWEKKDIERVEEAMLKVLRAVSGSNWVNSRALRGAVCKLASKELLDYCLGGLGGKVVYGGMVVNARCNPQTGTFEYRLEAADGSSSGIIANNSSGSKYPSKENLLQCLRYLYEALLHPQMMVNYAPEGTRVLAMSSAQKLLDCKQFVKDYTPGVSPMSDLQKIRISCQVELVDEAEDPAAKTPPELIVLPANATVSDVKIEAANAFQDVYLMFRRFQVDELLGYSGVEDSTQVKHLLGSEEPATVCVRGRCMAKNGLSKFRMERGLERWTVDCNCGAKDDDGERMLACDICGVWRHTRCSNIRDIDPVPARYVCPKCQNSDPKPKSSSGHCKEVTVTNVSASGSCFGNGLPVHSDVR 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182468g00004 609 SMART PHD_3 524 570 IPR001965 -
Stsc182468g00004 609 SUPERFAMILY FYVE/PHD zinc finger 513 573 IPR011011 -
Stsc182468g00004 609 ProSitePatterns Uncharacterized protein family UPF0054 signature. 79 89 IPR020549 -
Stsc182468g00004 609 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 582 - -
Stsc182468g00004 609 Pfam PHD-finger 525 571 IPR019787 -
Stsc182468g00004 609 CDD PHD_MMD1_like 524 569 - -
Stsc182468g00004 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 510 576 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182468g00004 Stsc-Chr182468 14328 18266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182468g00004 5 569 PHD Transcription Factor Family AT5G22260 30.050 1.13e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc182468g00004 PHD 9.7e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182468g00004 K26271 - gmx:100818189 976.467