Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182453g00001 ATGTCTAGAAGCTTATTATCAAGGAACCTCTCATCATCACTTTCCTCCACCAAAATCATCTATTCCATAACATTGATTCTCTCAATAAACTCTCTTTTCTTCTTTCCATCTTGTTACTCTCTTGATGAACAAGGCAAGGCCCTTCTGGCATGGAAGAAAACTTTGAATGGAAGTTCTAAAGATGCACCATTATTGGCATCTTGGAACCCTTCAAACCAAACACCATGCAATAACTGGTTTGGTGTGAAATGCAACTCAGAAAATGAAGTCATAGAGATAAACCTGAACTCAGTGAACTTGCAAGGTTCTTCATTGCCTTCAAATCTTCAACCTCTTAAGTCCTTGAAGATTCTTGTCCTCTCATCAACCAACATCACAGGAAGGATTCCAAGAGAGTTTGGAGACTATCAAGAACTCATTTCAATTGATCTCAGTGGGAATTCTCTCTCTGGTGAAATACCAGAAGAGATTTGCAAGCTGAGAAAGCTGGAGAGCTTGGAACTCCATGATAACTCTCTTGAAGGCAAAATTCCACTGAGCATTGGGAATTTGTCAAGCCTTGTGAACTTGACACTCTTTGATAACAATCTGAGTGGTGAAGTTCCAAAGAGCATTGGATATTTGAGGAATCTTCAAGTGTTCAGAGCTGGAGGGAACAAAAATCTCAAGGGAGAGCTTCCATTTGAGATTGGAAACTGCACCAACTTGATCATGTTAGGCCTCGCCGAGACCGGAATCTCCGGCAGCATTCCTTCATCAATAGGGATGCTGAGAAGGCTTCAAACAATTGCAATTTACACAACACTGTTGTCAGGTTCTATTCCTGAAGAGATTGTAAACTGCAGTGAGTTGCAGAATGTTTATCTGTACCAGAACTCTATTTCTGGTTCAGTTCCAAGTCAAATTGGAAGACTCAGCAAGCTTCAGAATCTGTTCTTGTGGCAGAACAATTTGGTTGGAACAATTCCTGAAAGTCTTGGAAGCTGCACAGAACTCAATGCTGTAGATTTGTCACAGAATCTTCTCACTGGTAGCATACCAAAGAGTTTTGGAAAGCTATCAAATCTTCAAGTTCTTCAACTCAGTGTTAACCAGATTTCAGGTACTATACCTGATGAAATCTCAAACTGCACTTCTCTGAATCAGATTGAGGTTGACAACAATGCTATCTCTGGTGAGATTCCTTCCCTTATTGGCAACTTGAGAAGCTTGACTCTGTTCTTTGCATGGAAGAACAAGCTGACTGGAAGAATTCCAGATAGTCTTTCAGATTGCAAAGATCTTCAGGAGCTTGATCTTTCATACAACAGCTTGATTGGTTCGATACCGAAACGACTCTTCGGATTAAAGAACCTCTCAAAGCTGCTGCTAATTTCCAATGAATTCTCAGGCCTTATTCCACCTGATATTGGTAACTGCACAAGTTTATACAGGTTGAGGTTGAATCAGAACAAATTCTCAGGAGCCATTCCATCTGAGATTACCAACTTGAAGAATCTGAACTTCCTTGATCTTGGAAGCAATCATCTTGTAGGGGGGATTCCTCAAGAACTTCACAGATGCCGAAAACTCGAGTTTCTTGACCTTCATTCCAATGGTCTCACAGGTTCAGTTCCATATATGCTTCCAACAAGCCTTCAGATCATTGATTTCTCAGATAATAGGCTAGAAGGTGAACTAAACCATTCCATTGGTTCACTAACTGGATTGACAAAACTCAACTTGGGAAAGAATCATCTCAGTGGAAGAATCCCTTCAGAGATTGCTTCTTGTTCTAAGCTGCAACTTCTAGACTTGGGAGGCAATGCCTTTTCAGGTGAAATTCCAAAGGAAGTTGGTCGAATTGCTTCACTCGAAATCGCCCTCAATCTCAGCTATAACCAGTTTTATGGTGAAATTCCATCCGAATTCTCTGGCCTTAGCAAGCTTGGAGTGCTTGATCTTTCACACAACAAGCTCTCAGGGAAACTAGATGCTCTTTCTGAGCTTCAAAATCTTGTTTCCTTGAATGTTTCCTTCAATCACTTCTCTGGTGAATTGCCTAACACTCCATTCTTCAGGAAGATTCCAATCAGTGATATCACTTCAAATGATGGTCTCTTCATTGCTGGTGCTGCTTCTACACACAAAGTTCATGCAAGATTAGCCATGAAGATCATAATGTGCATTCTCTTGATCACAAGTGCAGCAGTAGCACTCTTCACACTCCATTTCTTGATTCGCACTTATATCGCCAACAAATCACTCATGAAGAGTGAAAACTGGGAGATAAATTTGTATCAGAAGTCTGAACTCTCATTCTCCATTGATGACATTGTCAAGAGTCTGATATCAGCCAATGTGATTGGAACTGGAAGCTCTGGTGTTGTGTACAAGGTAGAAACTAGAAATGGCAAAACACTAGCAGTTAAGAAGATGTGGACATCATCATCATCAGAGTCCAATGGAGGATTCAGTTCAGAAATTAAGACACTAGGTTCAATCAGACACAAGAACATCATCAAGCTTCTTGGTTCTGGATCCAACAAGAACAAGAGCATGAATCTGCTGTTTTATGAGTACCTCCCTAATGGAAGCCTGAGTTCATTGCTTCATGGTTCAGGAAAAGGAAAATCAGAATGGGAAACCAGATATGATATTGTGTTAGGATTGGCTCATGCACTTGCATATTTGCACCATGATTGTGTGCCTCCTATAATTCATGGAGATGTGAAATCCATAAATGTGTTACTAGGCCATGGCTATCATCCTTACCTTGCTGACTTTGGTCATGCAAGAATTGTTGCTGAAAATGCTGATGGTGACACTCAAAGACCCTACCTTGCTGGTTCCTATGGATACATGGCTCCGGAGCATGCATTGATGCAATCTATCACTGAGAAGAGTGATGTTTATAGTTTTGGTGTGGTCTTACTCGAGGTCCTCACAGGAAGGCACCCTTTGGATCCAACTCTTCCTGAGGGTGCAAACTTGGTTAATTGGGTCAAGAACCACTTGGCTAACAAAGGAGAAGAACCATTTGAGATCATTGACACAAAGCTTAGAGGGAGAAGAAATGACCCTACTATGCAGCAGCATCATGAGATTCTTCAAACTTTGGCTGTGTCATTTTTATGTATCAGCAACAATCCTGATGAACGTCCTACGATGAAGGACACTCTTGCAATGCTTAAGGAAATTAGACCCTTTGGTGAAGCCTCAACACTTCCCTAA 3213 0.4105 MSRSLLSRNLSSSLSSTKIIYSITLILSINSLFFFPSCYSLDEQGKALLAWKKTLNGSSKDAPLLASWNPSNQTPCNNWFGVKCNSENEVIEINLNSVNLQGSSLPSNLQPLKSLKILVLSSTNITGRIPREFGDYQELISIDLSGNSLSGEIPEEICKLRKLESLELHDNSLEGKIPLSIGNLSSLVNLTLFDNNLSGEVPKSIGYLRNLQVFRAGGNKNLKGELPFEIGNCTNLIMLGLAETGISGSIPSSIGMLRRLQTIAIYTTLLSGSIPEEIVNCSELQNVYLYQNSISGSVPSQIGRLSKLQNLFLWQNNLVGTIPESLGSCTELNAVDLSQNLLTGSIPKSFGKLSNLQVLQLSVNQISGTIPDEISNCTSLNQIEVDNNAISGEIPSLIGNLRSLTLFFAWKNKLTGRIPDSLSDCKDLQELDLSYNSLIGSIPKRLFGLKNLSKLLLISNEFSGLIPPDIGNCTSLYRLRLNQNKFSGAIPSEITNLKNLNFLDLGSNHLVGGIPQELHRCRKLEFLDLHSNGLTGSVPYMLPTSLQIIDFSDNRLEGELNHSIGSLTGLTKLNLGKNHLSGRIPSEIASCSKLQLLDLGGNAFSGEIPKEVGRIASLEIALNLSYNQFYGEIPSEFSGLSKLGVLDLSHNKLSGKLDALSELQNLVSLNVSFNHFSGELPNTPFFRKIPISDITSNDGLFIAGAASTHKVHARLAMKIIMCILLITSAAVALFTLHFLIRTYIANKSLMKSENWEINLYQKSELSFSIDDIVKSLISANVIGTGSSGVVYKVETRNGKTLAVKKMWTSSSSESNGGFSSEIKTLGSIRHKNIIKLLGSGSNKNKSMNLLFYEYLPNGSLSSLLHGSGKGKSEWETRYDIVLGLAHALAYLHHDCVPPIIHGDVKSINVLLGHGYHPYLADFGHARIVAENADGDTQRPYLAGSYGYMAPEHALMQSITEKSDVYSFGVVLLEVLTGRHPLDPTLPEGANLVNWVKNHLANKGEEPFEIIDTKLRGRRNDPTMQQHHEILQTLAVSFLCISNNPDERPTMKDTLAMLKEIRPFGEASTLP 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182453g00001 1070 FunFam Leucine-rich receptor-like protein kinase family protein 41 204 - -
Stsc182453g00001 1070 Gene3D Ribonuclease Inhibitor 219 280 IPR032675 -
Stsc182453g00001 1070 Gene3D Ribonuclease Inhibitor 39 218 IPR032675 -
Stsc182453g00001 1070 Gene3D Phosphorylase Kinase; domain 1 741 854 - -
Stsc182453g00001 1070 SUPERFAMILY RNI-like 335 679 - -
Stsc182453g00001 1070 ProSiteProfiles Leucine-rich repeat profile. 642 664 IPR001611 GO:0005515
Stsc182453g00001 1070 ProSiteProfiles Protein kinase domain profile. 776 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182453g00001 1070 Gene3D Transferase(Phosphotransferase) domain 1 855 1066 - -
Stsc182453g00001 1070 ProSitePatterns Serine/Threonine protein kinases active-site signature. 899 911 IPR008271 GO:0004672|GO:0006468
Stsc182453g00001 1070 ProSitePatterns Protein kinases ATP-binding region signature. 782 805 IPR017441 GO:0005524
Stsc182453g00001 1070 Gene3D Ribonuclease Inhibitor 451 542 IPR032675 -
Stsc182453g00001 1070 Gene3D Ribonuclease Inhibitor 621 708 IPR032675 -
Stsc182453g00001 1070 Pfam Leucine rich repeat N-terminal domain 42 85 IPR013210 -
Stsc182453g00001 1070 SUPERFAMILY RNI-like 92 415 - -
Stsc182453g00001 1070 SMART LRR_typ_2 160 184 IPR003591 -
Stsc182453g00001 1070 SMART LRR_typ_2 305 329 IPR003591 -
Stsc182453g00001 1070 SMART LRR_typ_2 497 521 IPR003591 -
Stsc182453g00001 1070 SMART LRR_typ_2 640 663 IPR003591 -
Stsc182453g00001 1070 SMART LRR_typ_2 353 377 IPR003591 -
Stsc182453g00001 1070 SMART LRR_typ_2 425 449 IPR003591 -
Stsc182453g00001 1070 SMART LRR_typ_2 567 591 IPR003591 -
Stsc182453g00001 1070 Gene3D Ribonuclease Inhibitor 544 620 IPR032675 -
Stsc182453g00001 1070 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 544 1058 - -
Stsc182453g00001 1070 Pfam Protein kinase domain 780 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182453g00001 1070 Pfam Leucine rich repeat 331 390 IPR001611 GO:0005515
Stsc182453g00001 1070 Pfam Leucine rich repeat 622 676 IPR001611 GO:0005515
Stsc182453g00001 1070 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515
Stsc182453g00001 1070 Pfam Leucine rich repeat 475 534 IPR001611 GO:0005515
Stsc182453g00001 1070 SMART serkin_6 776 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182453g00001 1070 FunFam Putative LRR receptor-like serine/threonine-protein kinase 621 706 - -
Stsc182453g00001 1070 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 855 1069 - -
Stsc182453g00001 1070 PRINTS Leucine-rich repeat signature 428 441 - -
Stsc182453g00001 1070 PRINTS Leucine-rich repeat signature 640 653 - -
Stsc182453g00001 1070 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 205 294 - -
Stsc182453g00001 1070 FunFam Leucine-rich receptor-like protein kinase family protein 348 620 - -
Stsc182453g00001 1070 Gene3D Ribonuclease Inhibitor 281 450 IPR032675 -
Stsc182453g00001 1070 SMART LRR_sd22_2 425 451 - -
Stsc182453g00001 1070 SMART LRR_sd22_2 497 529 - -
Stsc182453g00001 1070 SMART LRR_sd22_2 640 662 - -
Stsc182453g00001 1070 SMART LRR_sd22_2 543 569 - -
Stsc182453g00001 1070 SMART LRR_sd22_2 305 328 - -
Stsc182453g00001 1070 SMART LRR_sd22_2 353 376 - -
Stsc182453g00001 1070 SMART LRR_sd22_2 160 186 - -
Stsc182453g00001 1070 SUPERFAMILY Protein kinase-like (PK-like) 767 1057 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182453g00001 Stsc-Chr182453 3320 7067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182453g00001 38 1063 Receptor kinase-like Gene Family AT5G56040 63.188 0.0 1267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc182453g00001 Pkinase 1.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182453g00001 - - gmx:100813139 1479.92