Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182449g00005 ATGGGAAGACAAAGTGCTGGAAAATGGATCAGAAACTTAATTCTGGGCAAGAAATCATCATCAAAGTCTAATTCATCAAAAAACCAAGATATTCTTAAAGCTTCAACTAACAAGGATGTGGTGATGGTGGTGGTGTCTTCTACTTCTGAGGCACCAATGTCTCATCCAATTTTGACAACAGCCCCTCCAAGTTCTTCAGCTAAAGCCATAACAAAAGGAACCACACCAGAAAATGGTGTAGTTAATGGATCATCAAATGAAAAAGTTGTTATTATTGCAAGTGAAGATGGAAAGGCCAATGCAGAAACACAAGATGCTGTTGCTAATGTTGGATCTGTTGAGAAAATCAACCTTACAGATGCAGCTATAATAGCTCAAGCAGCTCTTAGAGGATATCAGGCACGCAGAAAGTTTGAGATGCTGAAAGGGTTCATACCCCTTCAAGCTCTTATTCGTGGCAATCTAGCTAGAAAAGAAGCTGTTTCTGCTCTATACTGTGTTAATGGAATAGTTAAAGTTCAAGCACTCTCTCGAGGTTACAGAGTTAGGCACTCTGCTATTGGTCTTCAAGTGCAGAAAACTTTTAAGGTATTCTACCAAGTTCTTGGGGGAGTTGCATCCCCAAAGGCAGAGAAGATTTCAGATAGTGTCTTTGTTCAAAAGCTTCTGGCATCGTCGCCGGCCGTGCTTTCTTATAGACAACTCAACTATGAATGGCTTGAACGTTGGACAAGATCAAGATTTTGGGCACCTGTAACAGAATTGAAGAAAAGTGATGAATCAGTGTGTGATGAGAAAAATGTTTTAGGCCAAACAGTTGAATGTGATGAGGAAAAAGCCAAAAGAAATGCTAAGAAAAAGGAATCAGGCATGGCATTGCATTCTTCAGCTAAGGAGAATGAGAAAAGGAAACATCACATGACAAGAAAAAGTTCAGATCATGCTACAACTTCAAGTGATGTTAAAAAGTTAGAAGTATCAAAGTCAAAAGAATCTGATATTGAAAATCATAGTAATAATTTCCAGAGAAGAGCTTCACTGCCTGCTAATTATTTCAAGAATGAGTCATCAGAAAACACTAGTACTACTCCTGCAAGAGTTCCAAGTTATATGGCTCCTACTGAGTCTGCAAAAGCTAAGCTAAGAGGACAAGACTACTCTCCAAGATTTGAAAGAAATGGTATAAACAGTAGGAGGCTGTCACTTTCATGTTCACTTAATGGAAAGTTAGGTTTGGTTTCTCCAAGATCAGCAAGATTTGGGACCATTGCAAGCAGCAAAGGGATGGCAAAGAAAGCAGATAACAGATCCCTTTCAACTTCAAGGGATTGGTCAGTTTCAGATAAGTGGATCCAACCTCAACCTCAGTGGAGAAGGTGA 1380 0.3942 MGRQSAGKWIRNLILGKKSSSKSNSSKNQDILKASTNKDVVMVVVSSTSEAPMSHPILTTAPPSSSAKAITKGTTPENGVVNGSSNEKVVIIASEDGKANAETQDAVANVGSVEKINLTDAAIIAQAALRGYQARRKFEMLKGFIPLQALIRGNLARKEAVSALYCVNGIVKVQALSRGYRVRHSAIGLQVQKTFKVFYQVLGGVASPKAEKISDSVFVQKLLASSPAVLSYRQLNYEWLERWTRSRFWAPVTELKKSDESVCDEKNVLGQTVECDEEKAKRNAKKKESGMALHSSAKENEKRKHHMTRKSSDHATTSSDVKKLEVSKSKESDIENHSNNFQRRASLPANYFKNESSENTSTTPARVPSYMAPTESAKAKLRGQDYSPRFERNGINSRRLSLSCSLNGKLGLVSPRSARFGTIASSKGMAKKADNRSLSTSRDWSVSDKWIQPQPQWRR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182449g00005 459 ProSiteProfiles IQ motif profile. 168 194 IPR000048 GO:0005515
Stsc182449g00005 459 MobiDBLite consensus disorder prediction 278 346 - -
Stsc182449g00005 459 MobiDBLite consensus disorder prediction 432 459 - -
Stsc182449g00005 459 Gene3D - 117 165 - -
Stsc182449g00005 459 MobiDBLite consensus disorder prediction 423 459 - -
Stsc182449g00005 459 ProSiteProfiles IQ motif profile. 140 169 IPR000048 GO:0005515
Stsc182449g00005 459 MobiDBLite consensus disorder prediction 278 302 - -
Stsc182449g00005 459 Pfam Protein of unknown function (DUF4005) 353 410 IPR025064 -
Stsc182449g00005 459 SMART iq_5 165 187 IPR000048 GO:0005515
Stsc182449g00005 459 SMART iq_5 140 161 IPR000048 GO:0005515
Stsc182449g00005 459 SMART iq_5 117 139 IPR000048 GO:0005515
Stsc182449g00005 459 Pfam IQ calmodulin-binding motif 119 138 IPR000048 GO:0005515
Stsc182449g00005 459 Pfam IQ calmodulin-binding motif 147 159 IPR000048 GO:0005515
Stsc182449g00005 459 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Stsc182449g00005 459 MobiDBLite consensus disorder prediction 311 338 - -
Stsc182449g00005 459 PANTHER IQ-DOMAIN 5-RELATED 1 405 - -
Stsc182449g00005 459 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182449g00005 Stsc-Chr182449 14847 16850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182449g00005 307 443 IQD Protein Family AT1G14380 33.113 2.39e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182449g00005 - - aip:107634789 516.538