Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182449g00003 ATGAAGAGATCATTTTTTTCTTCCTGTAACTTGTTTCCTGCAGCAATCCTTCTTGTTTTGCTTACTATAACAACAAGTACTTCTGCACAGCTAGTAAGAAGTGAGAACACAATCCTCTTCCAAGTTCAGAAGCTTCTAGAATATCCACAAGCCCTGCAAGGATGGAATAACTGGACCAACTTCTGCTACCTCCCTCCATCACCTTCCCTCACTGTAGTCTGCACAAATGGTCATGTCACAGAACTCACCATCATTGGAAACAAGACTAGTTCTCATCAAAGTCTTTCATCAAGGTTCTCCATTGATTCTCTCTTCACTGTGATGACAAAGTTATCAAATTTGAAGGCCTTATCCTTGGTTTCATTAGGTTTGTGGGGTCCATTACCTTCCAAAATCAACAGGTTCTGGTCTCTTGAAGTTCTCAACATTAGTTCAAACTTCATTTATGGTGAAATCCCACCATCAATATCAACATTGAAGAGCCTCAAGAGTCTTGTTTTGGCTGATAATCTCTTCAATGGAACTGTCCCAGATCTCAAAAAGTTAACTTTTCTTCAAGAGCTTAACTTGGGTGGCAACAAGCTTGGTCCTGATTTTCCTTCACTATTAGGCCAGAACCTTGTTACTGTTATCTTGAGGAACAATTCTCTGAGATCTCAGATTCCTCTTCAACTCAAAAAATTTGATAAGCTTCAGATACTTGACATATCTTCCAATGAAATCTTTGGAAAGATTCCATCTTTTCTTTTCTCTTTGCATTCTCTCCAGTACCTCAACTTGGCTGCAAACCAATTCAGTGGTAACCTTTCTGCGAAAACAACATGTGGTTCTGCACTAACATATGTGGATATCTCACACAATCTTCTATTTGGAAAGTTGCCAACATGCATTGGTTCACTGATTTCAAAGGGCAAGGTGCTATACTCTGGGAATTGTTTTTCAACAAGAAGGTTGAATGACCAGCAGCATCCATATTCATATTGCAAGAAAGAGGTTGCCTTAGCCGTCAAGCCACCAGCGAAAACAAAGAAGGAAAATGAATCCAGAGTGAAACTAGGCCTATTACTTGGTATAATTGGAGGTGCTGTGGGAATTGCAGCAGTTCTGGTTCTTCTCACTGTCTTCATTGTGAGGAAATCCAATGAAGATAGATCATATCGTCACCGGGACAGATCAGTTGCTGATAAATTTTACGCCCGAGCATCTCCCGGACCAAACACTGATACAAGACGTGTTCCTCAAACGATGAGGCTATCTGCAGTTGGATTGCCACCATACCGTAGTTTCACATTAGAAGACATTGAAGATGCAACAAACAACTTTGACCCAACAAATCTAGTAGGAGAAGGAACACAGGGCCAGCTATATAGAGGTTGGCTCAGAGATGGTGCAGTGGTCCTGGTTAACTGTGTAAAAATAAAGCAGAAGGGTTTGCCCCACAGCATTAACCAGAACATAGAGGTGTTGCCTAATTTGAGGCACAGGCATTTGATGAGTGTTCTAGGACACTGTGTTATTACTCATCAGGAAAATCCTCAACCAACAAGCACAGTCTTCATTGTATTTGAGCACATATCAAATGTGTCACTAAGAGATCAACTTATAGATTGGAGAAAGAGGGATATGCTGAAATGGCCACAAAGAATGGCAATCAGCATTGGCATAGCAAGAGGGGTGCAATTCTTGCACACAGGAGTCGCTCCTGGCATTTTCGGCAACAATTTGAAGATTGAGAACATTCTATTGGATGATAGCCTCAATGCAAAAGTTAGTAGATACAGCATTCCATTGCCATCCAAGAACACTGAACAAAATGCTCCCAATCAGATTGGCAGTGAAATAGAGGAGCTGAAGGATGAGCTGGAGAAAGGGTCATCAGAAGCACAATCAGTACTAAGGAGTGCAGTTGATCCTTGCCTGAGGGGAACTTATGCATATGAATCAATGAGGACTGCAGTTCAGATCACCGTCAATTGTCTCTCCAACGCTTCTAGTAAGCGCCCTTCGATCGAGGATGTTCTGTGGAACTTGCAGTACTCGATGCAAGTTCAAGAGTCCTGGACCAGCAGTGGAAATCTAAGCACAAAGTTCTGA 2094 0.4174 MKRSFFSSCNLFPAAILLVLLTITTSTSAQLVRSENTILFQVQKLLEYPQALQGWNNWTNFCYLPPSPSLTVVCTNGHVTELTIIGNKTSSHQSLSSRFSIDSLFTVMTKLSNLKALSLVSLGLWGPLPSKINRFWSLEVLNISSNFIYGEIPPSISTLKSLKSLVLADNLFNGTVPDLKKLTFLQELNLGGNKLGPDFPSLLGQNLVTVILRNNSLRSQIPLQLKKFDKLQILDISSNEIFGKIPSFLFSLHSLQYLNLAANQFSGNLSAKTTCGSALTYVDISHNLLFGKLPTCIGSLISKGKVLYSGNCFSTRRLNDQQHPYSYCKKEVALAVKPPAKTKKENESRVKLGLLLGIIGGAVGIAAVLVLLTVFIVRKSNEDRSYRHRDRSVADKFYARASPGPNTDTRRVPQTMRLSAVGLPPYRSFTLEDIEDATNNFDPTNLVGEGTQGQLYRGWLRDGAVVLVNCVKIKQKGLPHSINQNIEVLPNLRHRHLMSVLGHCVITHQENPQPTSTVFIVFEHISNVSLRDQLIDWRKRDMLKWPQRMAISIGIARGVQFLHTGVAPGIFGNNLKIENILLDDSLNAKVSRYSIPLPSKNTEQNAPNQIGSEIEELKDELEKGSSEAQSVLRSAVDPCLRGTYAYESMRTAVQITVNCLSNASSKRPSIEDVLWNLQYSMQVQESWTSSGNLSTKF 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182449g00003 697 Gene3D Transferase(Phosphotransferase) domain 1 525 613 - -
Stsc182449g00003 697 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 32 204 - -
Stsc182449g00003 697 SUPERFAMILY L domain-like 50 315 - -
Stsc182449g00003 697 Gene3D Ribonuclease Inhibitor 32 327 IPR032675 -
Stsc182449g00003 697 ProSiteProfiles Protein kinase domain profile. 441 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182449g00003 697 SUPERFAMILY Protein kinase-like (PK-like) 419 591 IPR011009 -
Stsc182449g00003 697 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 91 591 - -
Stsc182449g00003 697 Pfam Leucine Rich Repeat 230 249 IPR001611 GO:0005515
Stsc182449g00003 697 Pfam Leucine Rich Repeat 137 158 IPR001611 GO:0005515
Stsc182449g00003 697 Coils Coil 614 634 - -
Stsc182449g00003 697 Pfam Protein tyrosine and serine/threonine kinase 446 596 IPR001245 GO:0004672|GO:0006468
Stsc182449g00003 697 Gene3D Phosphorylase Kinase; domain 1 407 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182449g00003 Stsc-Chr182449 9525 12476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182449g00003 27 604 Miscellaneous Gene Families AT2G02780 51.839 2.77e-179 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Stsc182449g00003 PK_Tyr_Ser-Thr 2.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182449g00003 - - gmx:100789785 974.926