Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182449g00001 ATGTGGCCACCGAGTAAGGTTCTCAAGGCAACAAAAAATGGGGAACCAAATGAAGAAGCTTCTCATCATCATCATCACCATAATACTCGCCACAAGAAGGCTAGGGTTTCCATAAGAGCCAGATGTGACACACAAACGATGAATGATGGATGCCAATGGAGAAAATATGGACAAAAGATAGCTAAAGGAAATCCATGTCCTCGTTCATACTATCGATGTACTGTCTCTTCATCTTGTCCAGTAAGAAAACAGGTACAAAGATGTGCTCAAGACATGTCAATATTGATTACAACATATGAAGGAACTCACAACCATCCACTTCCTTCTTCAGCCACTCCCATGGCCTCTGCAACTTCCGCAGCCGCTTCCTCCTTCTCATCGTCGTCATCTTCTTCTTCTGCACCCACCATAGTCAACCCTAACAATAATACCCTAATAAGAGCACCACAACAATTCTACTTGTTCAACTCATCCATGATCACACCCTCCAATAACTTTCACCCAACAATAACTCTTGACCTTATTACCAAACCTCCAACTTCATCATCTTCCATACCAAAGTTTTCACCAACAAAAAATCTTGATTTTTCTTCTTCTTCTACTTCTACTACTACTTTCTCTCCATTGCAGTATAGCACTCTAGACTCATCATCATCTCATTATTATTATTGGAACTCTAATAATAATAGTGGATGCTTCAATAATTATGGTGGTGGACTAATCACCCAACAAAATAGAAACACAATAATGAACAATAATAATAATAATGGAAAGCAACCATTATTTCAAAATCATCAAGGGCATTATTATCCCTACCAACAAAATTACATGCCCATTTTTCAACAACCTACTTTACCTGCAGATTATTATGCTTCCTCTGCTCTGAATAATAATCAACAAGAAAGAAACATCACATTACCATTGTTAACTTCACAACCGTCTAAAGGTTCCTATGCTTCTCCCTCTAAGAAAAGCTACCAATTCTTGCAGAAAAGGAAGTGA 1002 0.3812 MWPPSKVLKATKNGEPNEEASHHHHHHNTRHKKARVSIRARCDTQTMNDGCQWRKYGQKIAKGNPCPRSYYRCTVSSSCPVRKQVQRCAQDMSILITTYEGTHNHPLPSSATPMASATSAAASSFSSSSSSSSAPTIVNPNNNTLIRAPQQFYLFNSSMITPSNNFHPTITLDLITKPPTSSSSIPKFSPTKNLDFSSSSTSTTTFSPLQYSTLDSSSSHYYYWNSNNNSGCFNNYGGGLITQQNRNTIMNNNNNNGKQPLFQNHQGHYYPYQQNYMPIFQQPTLPADYYASSALNNNQQERNITLPLLTSQPSKGSYASPSKKSYQFLQKRK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182449g00001 333 Gene3D WRKY domain 32 109 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc182449g00001 333 MobiDBLite consensus disorder prediction 1 37 - -
Stsc182449g00001 333 FunFam probable WRKY transcription factor 31 32 109 - -
Stsc182449g00001 333 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 16 243 IPR044810 GO:0003700
Stsc182449g00001 333 Pfam WRKY DNA -binding domain 48 106 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc182449g00001 333 MobiDBLite consensus disorder prediction 310 333 - -
Stsc182449g00001 333 SMART WRKY_cls 47 107 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc182449g00001 333 SUPERFAMILY WRKY DNA-binding domain 40 108 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc182449g00001 333 ProSiteProfiles WRKY domain profile. 42 108 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc182449g00001 333 MobiDBLite consensus disorder prediction 310 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182449g00001 Stsc-Chr182449 3124 4323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182449g00001 2 174 WRKY Transcription Factor Family AT5G15130 57.459 2.91e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc182449g00001 WRKY 8.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182449g00001 - - aip:107633968 404.445