Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182439g00002 ATGAGTCCAAAAAAACTAAATAGCATGGTTATAGTTTTTGCCATATACTTGTTGAGTCAACATGTTCATTCTGAGCTTGAAGTTGGGTATTACAGCGATTCATGTGGCATGGCTGAGTTCATTGTAAAAGATGAAGTCAGGAAAGCTTATAATAGGGATCCTGGACTTGCTGCTGGGCTTGTTAGAATGCATTTTCATGATTGCTTCATTAGAGGATGTGATGGATCAGTGCTTCTTGATTCCACTCCCTCAAACACTGCAGAGAAAGACTCTCCGGCGAATAATCCAAGTCTTAGAGGATTTGATGTCATTGACAGTGTTGGAGGAGTTGGTTATGACGTTCCAGCTGGAAGAAGAGATGGTAGAATCTCACTAATTTCAGACACCAGAACTGACTTGCCTCCTCCAACTTTCAACGTTAACCAACTCACTCAGCTCTTTGCAAAGAAGGGCTTAACAAAAGAAGAAATGGTCACCCTCTCAGGAGCACACACCATTGGACGCTCTCATTGTGTCGCTTTTAACAGCAGGCTATACAATTTCAGCACTAGTTCTCTTCAGGATCCAAGTATGGATCCCTCATATGCATTGTTCTTGAAGAGAAGATGTCCACAAGGGAATACAAACCAAAACATTGTGGTTCCAATGGACCCTACGAGTCCTGGCGTCGCAGATGTAGGGTACTATAATGGTATTTTGGCAAATAGAGGTCTGTTCATATCTGACCAAACTCTCTTGACTGACACAGAGACTGCTAGCCAAGTGTATCAGTATTCAAGGGATCGATACACTTGGGCAAGCAAGTTTGCAGATGCAATGGTGAAGATGGGTCAAATTGGTGTCTTAACTGGTAATGATGGAGAGATAAGAGAAAATTGCAGAGTGGTCAATAGCTAA 897 0.4225 MSPKKLNSMVIVFAIYLLSQHVHSELEVGYYSDSCGMAEFIVKDEVRKAYNRDPGLAAGLVRMHFHDCFIRGCDGSVLLDSTPSNTAEKDSPANNPSLRGFDVIDSVGGVGYDVPAGRRDGRISLISDTRTDLPPPTFNVNQLTQLFAKKGLTKEEMVTLSGAHTIGRSHCVAFNSRLYNFSTSSLQDPSMDPSYALFLKRRCPQGNTNQNIVVPMDPTSPGVADVGYYNGILANRGLFISDQTLLTDTETASQVYQYSRDRYTWASKFADAMVKMGQIGVLTGNDGEIRENCRVVNS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182439g00002 298 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Stsc182439g00002 298 Pfam Peroxidase 107 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 Gene3D - 26 107 - -
Stsc182439g00002 298 ProSitePatterns Peroxidases proximal heme-ligand signature. 156 166 IPR019793 -
Stsc182439g00002 298 SUPERFAMILY Heme-dependent peroxidases 26 297 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 Gene3D - 108 297 - -
Stsc182439g00002 298 CDD secretory_peroxidase 25 296 IPR033905 GO:0004601|GO:0042744
Stsc182439g00002 298 PRINTS Plant peroxidase signature 271 284 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 PRINTS Plant peroxidase signature 215 230 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 PRINTS Plant peroxidase signature 231 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 PRINTS Haem peroxidase superfamily signature 108 120 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 PRINTS Haem peroxidase superfamily signature 156 171 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 PRINTS Haem peroxidase superfamily signature 217 232 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 ProSiteProfiles Plant heme peroxidase family profile. 25 297 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 PANTHER PEROXIDASE 25-RELATED 111 290 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc182439g00002 298 FunFam Peroxidase 134 276 - -
Stsc182439g00002 298 Gene3D Peroxidase, domain 2 134 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182439g00002 Stsc-Chr182439 7945 9305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182439g00002 22 298 Peroxidase AT1G05260 43.506 2.94e-79 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182439g00002 K00430 - gmx:100779031 464.151