Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182427g00002 ATGTTTGCAGTTCAAAAAAGCAGCACAGAAGAGAGCAGTCATCAGAAGAATGAGAAGAACAGCATGAATATGAATGGTAATAATAATGGAAGCTTTGTGAAGGTAAGCATGGATGGTGCACCCTACCTTCGCAAAGTGGATTTGAAGATGTACAACAGTTACCCTCAGCTCTCTGATGCCTTAGCTAAAATGTTTAGCTCTTTCACCATTGGAAGTTGTGAATCAGAAGGAATGAAGGATTTCTTTATGAATGAGAGAGCTTTGATGGATGTATTGAACAGTTCTGATTATGTCCCAACTTATGAAGATAAGGATGGCGATTGGATGCTTGTCGGTGATGTTCCTTGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAAGAAGCAATTGGACTGGCACCTAGAGCCATGGAGAAATGCAAGAACAGAAGCTAG 450 0.4044 MFAVQKSSTEESSHQKNEKNSMNMNGNNNGSFVKVSMDGAPYLRKVDLKMYNSYPQLSDALAKMFSSFTIGSCESEGMKDFFMNERALMDVLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS 149
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc182427g00002 149 Gene3D - 24 143 - -
Stsc182427g00002 149 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 136 IPR003311 GO:0005634|GO:0006355
Stsc182427g00002 149 Pfam AUX/IAA family 11 140 IPR033389 -
Stsc182427g00002 149 ProSiteProfiles PB1 domain profile. 30 131 IPR000270 GO:0005515
Stsc182427g00002 149 MobiDBLite consensus disorder prediction 1 28 - -
Stsc182427g00002 149 FunFam Auxin-responsive protein 25 141 - -
Stsc182427g00002 149 SUPERFAMILY CAD & PB1 domains 21 130 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc182427g00002 Stsc-Chr182427 14459 16776 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182427g00002 1 129 B3 DNA Binding Superfamily AT5G37020 30.233 3.32e-08 49.7
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc182427g00002 AUX_IAA 1.2e-64 CL0072
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182427g00002 K14484 - gmx:100803065 230.72