Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182416g00003 ATGCAAATGCTACTGCAAATATTATCTATCCCTACTGCAGCAATTCTCCTTGTGATATTGACATTTATCATTTTTCTATCACCGCTTTTGTTGAATTTAGCAGAAAAACTTCAACAAAACAAATGGGGTAGTAAAAAGCTCCCACCAGGTCCAAAGCCTTTACCAATTATTGGTAACCTTCATATGTTATTTGGAAAACACCCAAACCGAAGCCTTGAGGCCCTTGCCACTAAATATGGACCCATAATGTCTCTAAAGTTAGGACAAGTTCCTGCCGTTGTGGTTTCTTCTTCAGAAGTTGCTCAGCTCTTTTTGAAAACTCATGACATAGTTTTTGCAAACCGGCCTAAGCTCCAGTTAGCAGAGATAATTCCTTATGCCCGGAAGGGGTTTATATTTACAGACTACGGAGATTATTGGCGCCACGTGAGGAAGTTGTGCGCCATGCAATTTCTAAGTGCATCAAAGATTGAGATGTTTGGTCCTTTGAGGAATAAGGAGTTGGGAGTGCTGGTGAATACACTTAAGAAGGCTTCGAATTCAGGTGACGTTGTGGATCTCAGTGAATTGATTGATGAGGTTGTTGCCAATATTGCTGATACCATGATACTGGGTGGTAGCAAGGACGATAAGTTTGACACCACAGGCATTATTTTTGAGGCTATGCATTCAGCTGGTGCTTTCAATCTTGGAGATTATTTTCCTATATTAGGTTTATTTGATCTTCAGGGACTACAGAGAACAACAAAGAAAGCATTCCAGCTTGCTGATGAAGTAATGGAAAAGATCATCAACGATCATCAACAACCTTCATCAGCTAAATCCCCAAACCATAACAAGGATCTCATTGACATATTACTCAGCCACATGAATCAATCAATGGAGGACTCACATGATCATCATGAACAGAGACTTATTGGGAGAACCAACATAAAGGCCATTGCAATGGATATGACTGCTGCAGCATACGACACTTCCAAATCGACATTCGAATGGGGCATGTCAGAGCTTTTAAAGAATCCAACAACAATGAAGAAACTTCAGAAGGAGATTGAAGACCTTGTGGGAATAAACAGACAAGTGGAAGAAGAAGACTTAGATAAATTGCCTTATCTTGACATGGTTGTGAAGGAGATATTACGATTACACCCTCCTGTACCATTTCTTTTGCCACACGAGTCTTCAGAAGATGTTACCATAAATGGTTACTTCATAGAGAAAAATACAAGAATTCTAGTGAATGTATGGCAATAG 1254 0.3971 MQMLLQILSIPTAAILLVILTFIIFLSPLLLNLAEKLQQNKWGSKKLPPGPKPLPIIGNLHMLFGKHPNRSLEALATKYGPIMSLKLGQVPAVVVSSSEVAQLFLKTHDIVFANRPKLQLAEIIPYARKGFIFTDYGDYWRHVRKLCAMQFLSASKIEMFGPLRNKELGVLVNTLKKASNSGDVVDLSELIDEVVANIADTMILGGSKDDKFDTTGIIFEAMHSAGAFNLGDYFPILGLFDLQGLQRTTKKAFQLADEVMEKIINDHQQPSSAKSPNHNKDLIDILLSHMNQSMEDSHDHHEQRLIGRTNIKAIAMDMTAAAYDTSKSTFEWGMSELLKNPTTMKKLQKEIEDLVGINRQVEEEDLDKLPYLDMVVKEILRLHPPVPFLLPHESSEDVTINGYFIEKNTRILVNVWQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182416g00003 417 Gene3D Cytochrome P450 41 417 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182416g00003 417 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182416g00003 417 PRINTS E-class P450 group I signature 76 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182416g00003 417 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182416g00003 417 PRINTS E-class P450 group I signature 100 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182416g00003 417 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182416g00003 417 PANTHER CYTOCHROME P450 93A3-LIKE 29 417 - -
Stsc182416g00003 417 SUPERFAMILY Cytochrome P450 48 416 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182416g00003 417 Pfam Cytochrome P450 48 416 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182416g00003 417 Coils Coil 344 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182416g00003 Stsc-Chr182416 9009 12224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182416g00003 38 416 Cytochrome P450 AT3G48310 35.000 6.73e-81 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182416g00003 - - adu:107490427 523.472