Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182410g00002 ATGGCGGCAGCGGCAGCGATTTCTTCACCGGTGGCTCAGGCAACGGCGGCTCCGGCGGCGGCATTGGGCGTAGGCCCATTCTCGAATGCATCTCTGTACGTAGGGGATCTGGAGGCGAACGTGAACGAGGCGCAGCTTTATGATCTGTTCAGTCAGATTGCTCCGATTGTTTCGATTAGGGTTTGCAGGGATCTTACGAAGCGATACTCTCTCGGTTACGCTTATGTTAACTATTCCAGTTATGAACATGCTGCAAATGCAATGGAGCTTCTGAACTTCAGTCATTTGAATGGGAAACCCATTCGAATTATGTTTTCCCAACGTGATCCTAGCATTCGGAAAAGTGGATATGCCAATGTGTTCATCAAGAACCTTGACACTGCAATTGACAACAAGGCATTACATGACACATTTGTTGCTTTTGGAACTGTGCTTTCTTGCAAGGTTGCCCTTGATAGCAATGGCAATTCAAAAGGCTATGGTTTTGTACAATTTGAAAAGGAAGAAGCTGCTCAGAATGCCATCAAACAGTTGAATGGCATGTTGATTAATGATAAACAGGTTTTTGTGGGACTCTTTGTTCGACGGCAGGAAAGGGCTCGAACAAATGGATCACCAAAGTTCACTAATGTGTATGTGAAAAATTTGCATGAAACACAAACCGATGATGACTTGAATCAACTGTTTAGCCCATATGGTACAATAACTAGTGCAACAGTTATGAAAGATATGAATGGGAAGTCTAGATGTTTTGGTTTTGTTAATTTCCAGAGTCCAGATTCAGCGGCTGCTGCAGTTGAGAAGTTAAATGGAACTACGATCAACAACGATGACAAGGTTTTATTTGTAGGTAGAGCTCAGAGGAAAGCTGAAAGAGAGGCTGAGTTGAAAGCCAAATTTGAGCAGGAAAGATTAAGCAGATATGAGAAGTTACAGGGTGCAAACCTATACTTGAAAAATCTTGATGACAGCATCAATGATGAGAGGTTGAAGGATCTATTTTCTGAATTTGGAACAATAACATCTTACAAGGTGATGCTTGATCCACATGGACATAGTAGAGGGTCTGGTTTTGTTGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAGTTGGTTGGGCGGAAGCCTCTGTATGTTGCTGTTGCCCAGCGCAAAGATGAGAGGAAGGCTCGTCTACAGGCTCAGTTTGCTCAAATGCAGTCACCTGGTGGAATGTCGCCTATGCCCTCAGGAATTCCTGGGTATCATCCAGGAGCACCAAGGCTTGCCCCTCAACAGATGTATTTTGGACAAGGAACACCCAGCTTCATGCCACCACAGCCTGCTGGTTTTGGTTTCCAGCAGCAAATGTTGCCTGGAATGCGTCCTGGTGTTGCTCCAAATTTTGTGATGCCATACCACCTTCAGAGACAGGGTCAGCCTGGGCAGAGGATGAGCATTCGACGAGGTGGAAACCTCCAACAAGTGCAGCAGAACCAGATGCTGCATCGTAACTCCAACCAAGGGTTTAGATATATGGGCAATGGCAGAAATGGTATGGATCCATCCGTTCCTCAAGGTCTAGTTGGTCCAATGATGCCCATGTCCTTTGATGGATCTGTATCTCCTCTTGATAACCAGCGCCCTGGAACATTGTCTACCACCCTTGCCTCTGCTCTGGCTTCTGCAACCCCAGAAAATCAGCGAATGATGCTGGGTGAACATCTGTATCCTCTGGTGGAGCGTCTTACTCCGACTCAACACACGGCAAAGGTGACAGGCATGTTGCTGGAAATGGACCAGTCAGAGGTAATCCATCTCATTGAGTCTCCTGAGGACCTGAAGATTAAGGTCTCCGAGGCAATGCAGGTCCTTCACGAAGCTGCAACCGGTTCTGATGTTGGTGATCAGCTGGGCTCATTGTCATTGAATGAATGA 1938 0.4598 MAAAAAISSPVAQATAAPAAALGVGPFSNASLYVGDLEANVNEAQLYDLFSQIAPIVSIRVCRDLTKRYSLGYAYVNYSSYEHAANAMELLNFSHLNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTAIDNKALHDTFVAFGTVLSCKVALDSNGNSKGYGFVQFEKEEAAQNAIKQLNGMLINDKQVFVGLFVRRQERARTNGSPKFTNVYVKNLHETQTDDDLNQLFSPYGTITSATVMKDMNGKSRCFGFVNFQSPDSAAAAVEKLNGTTINNDDKVLFVGRAQRKAEREAELKAKFEQERLSRYEKLQGANLYLKNLDDSINDERLKDLFSEFGTITSYKVMLDPHGHSRGSGFVAFSTPEEASKALNEMNGKLVGRKPLYVAVAQRKDERKARLQAQFAQMQSPGGMSPMPSGIPGYHPGAPRLAPQQMYFGQGTPSFMPPQPAGFGFQQQMLPGMRPGVAPNFVMPYHLQRQGQPGQRMSIRRGGNLQQVQQNQMLHRNSNQGFRYMGNGRNGMDPSVPQGLVGPMMPMSFDGSVSPLDNQRPGTLSTTLASALASATPENQRMMLGEHLYPLVERLTPTQHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLHEAATGSDVGDQLGSLSLNE 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182410g00002 645 Coils Coil 283 311 - -
Stsc182410g00002 645 Gene3D - 311 413 IPR012677 -
Stsc182410g00002 645 FunFam Polyadenylate-binding protein 297 402 - -
Stsc182410g00002 645 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 630 IPR002004 GO:0003723
Stsc182410g00002 645 FunFam Polyadenylate-binding protein 113 199 - -
Stsc182410g00002 645 Gene3D - 551 630 - -
Stsc182410g00002 645 Gene3D - 25 118 IPR012677 -
Stsc182410g00002 645 Gene3D - 202 310 IPR012677 -
Stsc182410g00002 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Stsc182410g00002 645 Gene3D - 119 192 IPR012677 -
Stsc182410g00002 645 FunFam Polyadenylate-binding protein 200 296 - -
Stsc182410g00002 645 FunFam Polyadenylate-binding protein 9 112 - -
Stsc182410g00002 645 CDD RRM3_I_PABPs 208 289 - -
Stsc182410g00002 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
Stsc182410g00002 645 SMART rrm2_1 119 191 IPR003954 GO:0003676
Stsc182410g00002 645 SMART rrm2_1 315 387 IPR003954 GO:0003676
Stsc182410g00002 645 SMART rrm2_1 210 283 IPR003954 GO:0003676
Stsc182410g00002 645 SMART rrm2_1 31 104 IPR003954 GO:0003676
Stsc182410g00002 645 CDD RRM2_I_PABPs 116 191 IPR045305 -
Stsc182410g00002 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Stsc182410g00002 645 FunFam Polyadenylate-binding protein 549 631 - -
Stsc182410g00002 645 Pfam Poly-adenylate binding protein, unique domain 560 625 IPR002004 GO:0003723
Stsc182410g00002 645 CDD RRM4_I_PABPs 313 391 - -
Stsc182410g00002 645 SMART poly_2 564 628 IPR002004 GO:0003723
Stsc182410g00002 645 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Stsc182410g00002 645 SUPERFAMILY RNA-binding domain, RBD 208 395 IPR035979 GO:0003676
Stsc182410g00002 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Stsc182410g00002 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 384 IPR000504 GO:0003723
Stsc182410g00002 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 187 IPR000504 GO:0003723
Stsc182410g00002 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 276 IPR000504 GO:0003723
Stsc182410g00002 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 288 IPR000504 GO:0003723
Stsc182410g00002 645 SMART rrm1_1 210 284 IPR000504 GO:0003723
Stsc182410g00002 645 SMART rrm1_1 119 191 IPR000504 GO:0003723
Stsc182410g00002 645 SMART rrm1_1 31 104 IPR000504 GO:0003723
Stsc182410g00002 645 SMART rrm1_1 315 387 IPR000504 GO:0003723
Stsc182410g00002 645 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Stsc182410g00002 645 PANTHER RNA BINDING PROTEIN 29 107 - -
Stsc182410g00002 645 SUPERFAMILY PABC (PABP) domain 497 629 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182410g00002 Stsc-Chr182410 1321 5695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182410g00002 29 639 Eukaryotic Initiation Factors Gene Family AT1G71770 58.720 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182410g00002 K13126 - gmx:100783163 1044.26