Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182394g00001 ATGGGAAGAGCTCCTTGCTGTGATAAGGCTAATGTAAAGAGAGGTCCATGGTCTCCTGAAGAAGATGAGAAGCTCAAGAACTACATAGACAAATATGGCACTGGTGGTAATTGGATTGCTCTTCCATCAAAAGTTGGTTTGAAAAGATGTGGAAAGAGCTGTAGACTGAGATGGCTGAATTATCTTCGGCCTAACATTAAGCATGGTGAGTTCTCAGAAGCAGAAGATAGAGTAATCTGCAACCTGTTCGCTACCATTGGAAGCAGGTGGTCAATCATTGCATCTCAATTGCCAGGAAGAACTGACAATGATATCAAGAATTACTGGAACACTAAGCTTAAGAAGAAAATGATCATGGCCATCAATAATAACAATAATAATAGCAATCAATCATCTTCTTCAATTTTTCATCAAAGGAAGCCTACTCCTCCTTCTTCTCATCATCATGAACAAGTTACCCTTTTATCCATGTTGCAACATAATCCAACATCATCATCATTCAGCCATAATCATCATTTCAATGCCCCTGCTGCTGCTGCTGGATCCTCCTATTCTTCATACACATCAAGCCTTCTGAGTGGGAACTCATCCACTTCCAATTCAAATTCCAATTTTCAAGGGCAAGAAAGCTTGATGGGACATAATAATAATAATAATAGCATGTTTATGTTTGGGGGTGGTGAAGCTACTAGCTGCAGCTCTTCTGATGCTAGCTGCAACAACAACAATATCAATAACAATCATGGAACTTTTGTTGTTGATCTCTACAATAATAATAATAATGGTGCAGAGACTACAGAGAAACAAGGTGGAATATTATGGGGAGAAGAAAATCCATTGGAGGATTATGGCATAGAAGATATCAAAGAGCTAATAGGCACTACTACAACATCTTCTACTACTAATTGTAACAACTTTTTGTTTGGAGAAAAGAAGACAGAGGAAAGGGTCATGTACTACTACTGA 966 0.3841 MGRAPCCDKANVKRGPWSPEEDEKLKNYIDKYGTGGNWIALPSKVGLKRCGKSCRLRWLNYLRPNIKHGEFSEAEDRVICNLFATIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMIMAINNNNNNSNQSSSSIFHQRKPTPPSSHHHEQVTLLSMLQHNPTSSSFSHNHHFNAPAAAAGSSYSSYTSSLLSGNSSTSNSNSNFQGQESLMGHNNNNNSMFMFGGGEATSCSSSDASCNNNNINNNHGTFVVDLYNNNNNGAETTEKQGGILWGEENPLEDYGIEDIKELIGTTTTSSTTNCNNFLFGEKKTEERVMYYY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182394g00001 321 MobiDBLite consensus disorder prediction 123 150 - -
Stsc182394g00001 321 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc182394g00001 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Stsc182394g00001 321 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc182394g00001 321 Gene3D - 69 142 - -
Stsc182394g00001 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Stsc182394g00001 321 PANTHER OS09G0431300 PROTEIN 1 258 - -
Stsc182394g00001 321 FunFam Transcription factor RAX3 7 68 - -
Stsc182394g00001 321 Gene3D - 7 68 - -
Stsc182394g00001 321 MobiDBLite consensus disorder prediction 191 219 - -
Stsc182394g00001 321 CDD SANT 16 62 IPR001005 -
Stsc182394g00001 321 CDD SANT 70 113 IPR001005 -
Stsc182394g00001 321 SMART sant 13 64 IPR001005 -
Stsc182394g00001 321 SMART sant 67 115 IPR001005 -
Stsc182394g00001 321 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc182394g00001 321 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc182394g00001 321 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182394g00001 Stsc-Chr182394 4273 5770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182394g00001 1 118 MYB Transcription Factor Family AT5G57620 86.441 3.33e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc182394g00001 Myb_DNA-binding 9.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182394g00001 K09422 - csav:115711635 300.056