Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182385g00002 ATGTATGCTGTTGTTTGGGTTGCCAACAGGGACATCCCCATCAATGGTTCTTCAGGAATATTGACAATGAACAGCACAGGGAATCTTGTACTCACACAAAATAGAACTGTTGTTTGGTACACAACAACAACTGCGGCTCGAAAACAAGCACATAATCCAGTGGTTGAACTCTTGGACAGTGGCAATCTCGTGGTGAGAAATGATGGAGAAGAAGCAAACACAGAAGAATACTTGTGGCAAAGTTTTGACTATCCAACTGATACATATTTTCCAGGGATGAAAGTAGGAAGGGATCTTAAGAATGGTTTCGACTGGGGATTAACATCTTGGAAGAGTCAAGATGATCCATCCCCTGGAGACATTTCTTGGGGTTTAGTCCTCAGTGGTTATCCAGAATTCTCCATTATGAACAGAACGACAAAGATATGCAGGATTGGACCTTGGAATGGCATGTATTTCACTGGATATACAGAGCAAAAGTTTCAATCCGGTTTTGGAATTACTTATGTTTCCAACAAGGATGAGATATTCTATACCTACAGCTCCAAGAATGTTATCTCAAGAGTTGTCATAAACTCAACGACTTATGTCTGGATGGAAAAACAACAGAAATGGGATATTTACTATGTGCTTCCGGGTGATGTTTGTGATACTTATGGCCTTTGTGGAACCAACTCAAATTGCATAACTACAGACCCACGCATCTGCCAATGTTTAAAAGGATTTAGTCCAATAGCATGGAACTCGTCCCACTGGGATCAGGGATGCGCCCGCAATGAACCACTAAGCTGCAATGGCACAAGCAGTAGTGATGGGTTTGTCAAATATACAAGCTTGAAACAACCGGATACTCAACATACCAAGCTGGATGAGAATATCAATTTAGATGAATGCAGAAATCTGTGTCTGAAGAATTGCTCTTGTATGGCTTTGGCTAATTCAGACATAAGACGAGGTGGTAGTGGCTGTGTCATGTGGTTTGGTGATCTGATCGACCTCAAATTGTTTCCGAACAGGGAACAAATTCTGTATATCCGAATGCCTGCTTCTGAGTTGGAGCTTCAACATGAGCGCAAGAAAAGGGTGATAATTGCTAGCATCATTTCTGCAATTTGTGGGGTGCTTTTACTTTGTATGTACGTTATATACAGAGTCCGAAGGAATATTGCTGAAAAGTCAAAGACAGAAGAATATACCGATGAAGGCTATATGAAAGATACGGATCTACCACTATTTGATCTACTAACAATTAATATTGCCACCAACAAGTTCTCGTTCATTAACAAGATTGGGCAAGGTGGTTTTGGACCTGTGTATAAGGGAAAATTAGCAGATGAACAAGAAATTGCAGTTAAAAGACTTTCACATAGCTCCGGACAAGGAATGGCTGAACTCATAACTGAAGTAAAACTAATTTCAAAACTTCAACACCGAAATTTGGTCAAACTTCTTGGCTGTTGCATTCAAGGAGAAGAAAAATTGCTAGTTTATGAATATGTGTTTAATGGTAGCCTAGACACCTTCACTTTTGATCAAACGAAAAGCAAGTTGTTGGATTGGCCTCAACGCTTCAACATAATATTTGGAATTGTTAGGGGACTCTTGTATCTTTTCACCAAGATTCTAGATTGA 1632 0.3989 MYAVVWVANRDIPINGSSGILTMNSTGNLVLTQNRTVVWYTTTTAARKQAHNPVVELLDSGNLVVRNDGEEANTEEYLWQSFDYPTDTYFPGMKVGRDLKNGFDWGLTSWKSQDDPSPGDISWGLVLSGYPEFSIMNRTTKICRIGPWNGMYFTGYTEQKFQSGFGITYVSNKDEIFYTYSSKNVISRVVINSTTYVWMEKQQKWDIYYVLPGDVCDTYGLCGTNSNCITTDPRICQCLKGFSPIAWNSSHWDQGCARNEPLSCNGTSSSDGFVKYTSLKQPDTQHTKLDENINLDECRNLCLKNCSCMALANSDIRRGGSGCVMWFGDLIDLKLFPNREQILYIRMPASELELQHERKKRVIIASIISAICGVLLLCMYVIYRVRRNIAEKSKTEEYTDEGYMKDTDLPLFDLLTINIATNKFSFINKIGQGGFGPVYKGKLADEQEIAVKRLSHSSGQGMAELITEVKLISKLQHRNLVKLLGCCIQGEEKLLVYEYVFNGSLDTFTFDQTKSKLLDWPQRFNIIFGIVRGLLYLFTKILD 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182385g00002 543 ProSiteProfiles Bulb-type lectin domain profile. 1 78 IPR001480 -
Stsc182385g00002 543 Pfam PAN-like domain 264 333 IPR003609 -
Stsc182385g00002 543 SMART tyrkin_6 424 542 IPR020635 GO:0004713|GO:0006468
Stsc182385g00002 543 CDD PAN_AP_plant 261 348 - -
Stsc182385g00002 543 Pfam S-locus glycoprotein domain 144 244 IPR000858 GO:0048544
Stsc182385g00002 543 ProSiteProfiles PAN/Apple domain profile. 264 349 IPR003609 -
Stsc182385g00002 543 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 532 - -
Stsc182385g00002 543 SMART blect_4 1 85 IPR001480 -
Stsc182385g00002 543 ProSiteProfiles Protein kinase domain profile. 424 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182385g00002 543 Gene3D - 2 82 IPR036426 -
Stsc182385g00002 543 Pfam Protein tyrosine and serine/threonine kinase 425 539 IPR001245 GO:0004672|GO:0006468
Stsc182385g00002 543 Gene3D Transferase(Phosphotransferase) domain 1 410 541 - -
Stsc182385g00002 543 Pfam D-mannose binding lectin 4 111 IPR001480 -
Stsc182385g00002 543 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 388 499 - -
Stsc182385g00002 543 SUPERFAMILY alpha-D-mannose-specific plant lectins 4 116 IPR036426 -
Stsc182385g00002 543 CDD B_lectin 4 85 IPR001480 -
Stsc182385g00002 543 Gene3D Hepatocyte Growth Factor 266 344 - -
Stsc182385g00002 543 SUPERFAMILY Protein kinase-like (PK-like) 408 538 IPR011009 -
Stsc182385g00002 543 SMART ntp_6 268 347 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182385g00002 Stsc-Chr182385 16901 19144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182385g00002 362 537 Receptor kinase-like Gene Family AT4G23190 49.438 5.85e-48 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc182385g00002 PK_Tyr_Ser-Thr 4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182385g00002 - - aip:107612694 726.857