Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182383g00001 ATGGAAGGATCAGAAGCTTCTAGTGAAAATGACCAACGAGAAGTTCAAGATCATCATCATGAGTTATCCATCATGAGTACCAAAAGATCTTACGATTGCACATTCTGCAAGAGGGGATTCACTAACTCTCGTGCATTAGGAGGCCACATGAACATTCACAGGAAAGAGAGAACAAACGCCATGAAAGCCGCAGCCGCCACACCCAAAACCGAAATCACGGCGACTCCTTTTGTTCCAGAAACTTCTACAAGCTCGAGGTATTGCTGTATTTTGGAGGCTCAAGGTAACCATGAAATGTACCTTAGGCCCTCATCGCAAGAGCCTAATCATATAAACAACCCCCAACATGCATATACCTTCCAATACGAGTTTCTTAAGCCAAGAAACCAAGAAATTCTGGGTGCCAATTTAAGTCTCCAAATTGATCAAGATGATGATGACAATGATGAAGTTAGGAGAAGAATTCATCAGGAAGATGACATTAGAGTAGACTTGGAACTTAGGCTTG 508 0.4232 MEGSEASSENDQREVQDHHHELSIMSTKRSYDCTFCKRGFTNSRALGGHMNIHRKERTNAMKAAAATPKTEITATPFVPETSTSSRYCCILEAQGNHEMYLRPSSQEPNHINNPQHAYTFQYEFLKPRNQEILGANLSLQIDQDDDDNDEVRRRIHQEDDIRVDLELRL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182383g00001 169 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Stsc182383g00001 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Stsc182383g00001 169 Gene3D Classic Zinc Finger 5 84 - -
Stsc182383g00001 169 PANTHER OS07G0101800 PROTEIN 5 169 - -
Stsc182383g00001 169 MobiDBLite consensus disorder prediction 1 22 - -
Stsc182383g00001 169 SUPERFAMILY beta-beta-alpha zinc fingers 28 58 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182383g00001 Stsc-Chr182383 2520 3027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182383g00001 31 63 C2H2 Transcription Factor Family AT5G43540 72.727 2.87e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc182383g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182383g00001 - - mtr:25483021 134.42