Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182377g00001 ATGAACAACATTTTCTCTTCTACCTCGACTTCTTCCTCCACGGCCTCAGACGAGGACCTGGAGGAGAAGTACAGGAAGAAGAGGAAATGGAAGGAGTACTTCAGGAGGCTGACTAGGCAAGTGCTTGCCAAGCAAGAGGAGATGCAGAAGAGATTCTTGGAAGCCATTGAAAAGAGAGAGAGGGAGCAAGTCGCTCAGCAAGATGCCTGGAGGATGCAAGAGATGGCCAGGATCAATAGAGAGCATGACATCCTCGTTCAAGAGCGTTCAACCGCCGCCGCCAAAGACGCCGCCGTCATCGCATTCTTGCAAAAGATATCCGGCCAACAAACTCCACCACCAACAACAACACCACCACCAACAATCACAGTTTCCTTTGGTGCCGCCGCCAATTTATTCCAACAACCACCAGCACCGACACAACAACCGCCACCACAACCTGAACCGCAGCCGCAACCGCAACCAAAGAGCAATTTAGAACTCCAGAAAGTGACGAATAACGGTGAGAGTGCGGTGGTTCCATTGAGGAGCACTTGTTCATCACCATCATCAAGGTGGCCTAAAGCTGAAGTACACGCATTGATAAGGCTTCGAACGAGCATGGAACCAAAGTATCAGGAGAATGGACCAAAAGCACCGTTATGGGAGGACATATCAGCAGGGATGCAGAGGCTAGGGTACAACAGAAGCGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAAGAGAGCAAGAAGCAACGAAGAGAAGATAGCAAGACTTGTCCCTATTTTCACGAGCTCGATGCTCTTTACAGAGAGAAGAGTAGCAGCAAAGGGCAGAACACGTTTCACATCATGAATAAGACAAATGAAATGATGATGGAACCGTTGATGGTGCAACCCGAGCAGCAATGGAGGCCTCCCCCCCCTCAAGAACAGAAGGATAAGAATAATAATAATGTATCATCATGCCATCAAGAAGATGATGAATCGAGAAAGAGAGAGAGAGAATATGATCAAGAAGAGGAAGAAGAAGAAGAGGATGATGATGGAGTATTAGATGACGGAGATAGTGCGGAAGATGAAGGAGGTAATAACCGTTTTGAGATTGCGACAAATAAACTTTCTTCCGTTGAATGA 1143 0.4733 MNNIFSSTSTSSSTASDEDLEEKYRKKRKWKEYFRRLTRQVLAKQEEMQKRFLEAIEKREREQVAQQDAWRMQEMARINREHDILVQERSTAAAKDAAVIAFLQKISGQQTPPPTTTPPPTITVSFGAAANLFQQPPAPTQQPPPQPEPQPQPQPKSNLELQKVTNNGESAVVPLRSTCSSPSSRWPKAEVHALIRLRTSMEPKYQENGPKAPLWEDISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESKKQRREDSKTCPYFHELDALYREKSSSKGQNTFHIMNKTNEMMMEPLMVQPEQQWRPPPPQEQKDKNNNNVSSCHQEDDESRKREREYDQEEEEEEEDDDGVLDDGDSAEDEGGNNRFEIATNKLSSVE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182377g00001 380 MobiDBLite consensus disorder prediction 1 15 - -
Stsc182377g00001 380 Pfam Myb/SANT-like DNA-binding domain 184 271 IPR044822 -
Stsc182377g00001 380 ProSiteProfiles Myb-like domain profile. 184 242 IPR001005 -
Stsc182377g00001 380 MobiDBLite consensus disorder prediction 322 340 - -
Stsc182377g00001 380 Gene3D - 186 247 - -
Stsc182377g00001 380 CDD GT1 184 249 - -
Stsc182377g00001 380 MobiDBLite consensus disorder prediction 303 380 - -
Stsc182377g00001 380 MobiDBLite consensus disorder prediction 1 24 - -
Stsc182377g00001 380 MobiDBLite consensus disorder prediction 134 158 - -
Stsc182377g00001 380 FunFam Trihelix transcription factor GT-2 186 247 - -
Stsc182377g00001 380 MobiDBLite consensus disorder prediction 341 360 - -
Stsc182377g00001 380 MobiDBLite consensus disorder prediction 137 154 - -
Stsc182377g00001 380 Coils Coil 325 345 - -
Stsc182377g00001 380 Coils Coil 42 62 - -
Stsc182377g00001 380 PANTHER FI21293P1 9 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182377g00001 Stsc-Chr182377 5304 6446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182377g00001 25 305 Trihelix Transcription Factor Family AT1G76890 49.485 1.60e-80 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc182377g00001 Myb_DNA-bind_4 2e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182377g00001 - - gsj:114370603 409.068