LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc182376g00002	ATGGGGAGTGACAGCGAAGCAGAGAAGTCGGCGCATAAGGAGAAGGAGAGGAAGAAGATGCTTGCGCTTGCTCCTATTGCGAAGCCCCTTGCTGGCAAGAAGCTCTGCAAGCGAACCTTGAAGCTTGTTCGTAAGGCTGCTGAACATAAGTGCTTGAAGAGAGGAGTGAAGGAAGTTGTCAAAAGCATAAGGCGTGGTCATAAAGGAGTGTGTGTTATAGCTGGGAACATATCTCCCATTGATGTGATCACACATGTTCCTATATTGTGTGAAGAGGCTGACATTCCCTATGTATATGTCCCTTCCAAAGAAGATCTTGCAAGTGCTGGAGCAACAAAGAGGCCTACTTGCTGTGTGTTGGTGATGACCAAGCCTGCAAAGGGAGAACTGGAGAAAGGGGAGCAAGAGAAACTCAAGTCGGATTGTGATCAAGTTGTATCAGAAATTAATGAGATTACAGCTTCACTTTTTTGA	474	0.4599	MGSDSEAEKSAHKEKERKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEHKCLKRGVKEVVKSIRRGHKGVCVIAGNISPIDVITHVPILCEEADIPYVYVPSKEDLASAGATKRPTCCVLVMTKPAKGELEKGEQEKLKSDCDQVVSEINEITASLF	157

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc182376g00002	157	PRINTS	High mobility group-like nuclear protein signature	99	111	IPR002415	GO:0003723\|GO:0005730
	Stsc182376g00002	157	PRINTS	High mobility group-like nuclear protein signature	55	65	IPR002415	GO:0003723\|GO:0005730
	Stsc182376g00002	157	PRINTS	High mobility group-like nuclear protein signature	38	53	IPR002415	GO:0003723\|GO:0005730
	Stsc182376g00002	157	PRINTS	High mobility group-like nuclear protein signature	25	38	IPR002415	GO:0003723\|GO:0005730
	Stsc182376g00002	157	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	9	148	-	-
	Stsc182376g00002	157	PRINTS	Ribosomal protein L7A/RS6 family signature	71	84	IPR018492	-
	Stsc182376g00002	157	PRINTS	Ribosomal protein L7A/RS6 family signature	52	66	IPR018492	-
	Stsc182376g00002	157	PRINTS	Ribosomal protein L7A/RS6 family signature	87	97	IPR018492	-
	Stsc182376g00002	157	PRINTS	Ribosomal protein L7A/RS6 family signature	97	111	IPR018492	-
	Stsc182376g00002	157	FunFam	H/ACA ribonucleoprotein complex subunit NHP2	20	152	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc182376g00002	Stsc-Chr182376	8342	9514	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc182376g00002	51	124	Cytoplasmic Ribosomal Protein Gene Family	AT2G47610	28.378	6.09e-06	42.7

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc182376g00002	K11129		-	gmx:100305515	266.544

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