Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182358g00003 ATGATGAAGAGAGAAAGAGAAGTGATTGAAAGCATAACCATGGCGAATTGCTTGATGCTACTATCTAGAGGAAGTGATGATCATCAATTTGAGGCAACATATTCTTCAAGCTTTTCTTCTTCCAACAACAACAACAACCGGGTGTTTGAGTGCAAAACATGTAAGAGGCAATTCCCTTCATTTCAAGCACTTGGAGGGCATAGAGCTAGTCACAAGAAGCCAAGGTTGATGGATAATCATAATGATGATCATGGTGGAAAATTGGAAGAACAACAACAATTATTATTGGAACCTCAAAAGCCTAAGACTCATGAATGTTCCATTTGTGGGTTGGAATTTGCAATTGGTCAAGCATTAGGTGGACATATGAGGAGGCATAGAACTACTTCAAATTTGAATAATAATAATGGAAGCTTATTATTATTACATAATACCAATCATAATAATTCTTCTATTATGAGTAATAGTAGTGGTGGTGGTAGTAGTACTAGCCTTGAGTCTTCACCAAATGGGATATCAAAGAACAACAACAAGAAGAGAGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGCAGATTTTGAAGATTGGAAATTATTTGTGTTAG 618 0.356 MMKREREVIESITMANCLMLLSRGSDDHQFEATYSSSFSSSNNNNNRVFECKTCKRQFPSFQALGGHRASHKKPRLMDNHNDDHGGKLEEQQQLLLEPQKPKTHECSICGLEFAIGQALGGHMRRHRTTSNLNNNNGSLLLLHNTNHNNSSIMSNSSGGGSSTSLESSPNGISKNNNKKRVLVLDLNLTPFENDLQILKIGNYLC 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182358g00003 205 MobiDBLite consensus disorder prediction 71 86 - -
Stsc182358g00003 205 Gene3D Classic Zinc Finger 23 128 - -
Stsc182358g00003 205 SMART c2h2final6 104 126 IPR013087 -
Stsc182358g00003 205 SMART c2h2final6 49 71 IPR013087 -
Stsc182358g00003 205 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Stsc182358g00003 205 MobiDBLite consensus disorder prediction 64 86 - -
Stsc182358g00003 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Stsc182358g00003 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Stsc182358g00003 205 SUPERFAMILY beta-beta-alpha zinc fingers 47 126 IPR036236 -
Stsc182358g00003 205 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Stsc182358g00003 205 PANTHER ZINC FINGER PROTEIN ZAT5 10 193 - -
Stsc182358g00003 205 Pfam C2H2-type zinc finger 104 128 - -
Stsc182358g00003 205 Pfam C2H2-type zinc finger 48 74 - -
Stsc182358g00003 205 MobiDBLite consensus disorder prediction 146 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182358g00003 Stsc-Chr182358 16522 17293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182358g00003 2 204 C2H2 Transcription Factor Family AT2G28710 39.706 1.02e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc182358g00003 zf-C2H2_6 2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182358g00003 - - adu:107486331 267.314