Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182346g00001 ATGACTGATTACCGGTCACCGTCGACGATGAATCTTTGGACCGACGAAAACTCCTCCGTCATGGAAGCCTTCATGAGCTCCTCCGACCTATCCTCCCTCTGGCTCCCTCCGCCACAATCCTCCGCTTCCACCTCCGCACCACCACTACCACCGCAGCAGCAACCACCTCCTCCGCCTCCGTTCAACCAAGAAACCCTCCAGCACCGTCTCCAAGCCCTAATCGAAGGCGCAAGAGAGAGCTGGACCTACGCAATTTTCTGGCAGTGCTCCTACGACTACTCTAACGGCCTTCCACTCTTAGGTTGGGGCGACGGTTACTACAAAGGCGAAGAAGACAAAGGCAAAGGAAAAGCCACCAAAGCGACGTCGTATGAGCAGCAGCAACACCGTAAGAAGGTCCTCAGAGAATTAAACTCTCTAATTTCAGGTCCTTCAGCTTCACCCGACGAAGCCGTAGACGAAGAAGTAACCGACACGGAATGGTTCTTTCTTATATCGATGACTCAGCATTTCGTGAGCGGAACCGGCCTTCCCGGCCAGGCTTTCTTTAATTCCAGCCCGGTTTGGCTTGCCGGGCCTGACCGGTTATTGTCCTCCGGCTGTGACCGGGCCCGGCAAGGTCAGTCGTTTGGGATACAGACTATAGTTTGTATACCTTCAGCAAACGGCGTCGTTGAGTTGGGTTCCACGGAGCTTATTTTTCAGAACGCGGATCTGATGAGCAAGGTGAAGGTGTTGTTCAATTTTAGTAACAGTAGTGCTGACGTGGCAGGATCTTGGCCGTTGAGTTCTGCAGATCAAGGAGAGAACGATCCTTCGTTGTGGCTCAACGACCCTTCTTCCTCGGCCGGTGGGATCGAAATTCGAGATTCTGTTAATACTGTTACGGCGGCGACTGCCACCGTTGGTAACAACAAAACGGTGCCGGTAGTTTCCAATCCTGGCTCCTCGAGCGTGGTAACCGAAGCGCCGAAGAATCCTCAGCAGAATCAGGGTTTTGTGCTGAGGGAATTGAATTTCTCGAGCTCGTTGAAGCCGGAATCTGGCGAGATTCTGAGCTTCGGAGAGAATAAGAAGGGTTCTTATGGCGGAAATAGTAATAACGGTGGTAACAATTTGTTCTCTGTTCAGTCTCAGTCTCAGTCGCAGTTTGTCTCCGATGAGAACAAGAAGCGGAGATCCCCTACTTCGCGGAGCAGCATTGAGGATGGAATACTGTCTTTTACTTCCGGCGTGATCTTGCCGGCTTCAAATGTGAAGTCCGGCGGCGGAGGCGGAGATTCGGATCATTCGGATTTGGAAGCTTCTGTGGTGAAGGAGGCGGTTGAGCCGGAGAAAAGGCCGCGAAAGAGAGGGAGGAAGCCGGCGAACGGAAGGGAGGAGCCGCTCAATCATGTGGAGGCAGAGAGGCAGAGGAGGGAGAAGCTCAATCAGAGGTTTTATGCTCTTAGAGCCGTGGTTCCGAATGTGTCGAAGATGGACAAGGCTTCCCTGTTAGGAGATGCTATTTCATACATCAACGAACTTAAATCGAAGCTACAAGGGCTGGAATCTGAGAAAGGCGAATTGAGCAAGCAATTGGAAGATTCCAAGAAGGAGCTGGAGCTGGCTAGTAAGAATTCAGGGGCTTCACAGGCCGCGCCACTGCCTCCTCCTCCGCCGCCTGACAAGGAACAAAGGAGTCGTGCTAGTGGAGTAAATGGGAAATTGATTGATTTGGAGATTGAGGTTAAGATTATTGGTTGGGATGCTATGATTAGGATCCAATGTAGCAAGAAGAACCACCCTGCGGCGAGGCTGATGGCGGCGCTGCAGGACCTGGACTTGGAAGTTCACCATGCTAGTGTGTCAGTGGTTAATGATTTGATGATCCAGCAGGCTACGGTGAACATGGGAAGCCGGTTTTACACACAGGAGCAGCTCATGTTGGCGCTATCATCCAAAGTCGGCGGCGGCGGAGATGCTGAGTAG 1971 0.5226 MTDYRSPSTMNLWTDENSSVMEAFMSSSDLSSLWLPPPQSSASTSAPPLPPQQQPPPPPPFNQETLQHRLQALIEGARESWTYAIFWQCSYDYSNGLPLLGWGDGYYKGEEDKGKGKATKATSYEQQQHRKKVLRELNSLISGPSASPDEAVDEEVTDTEWFFLISMTQHFVSGTGLPGQAFFNSSPVWLAGPDRLLSSGCDRARQGQSFGIQTIVCIPSANGVVELGSTELIFQNADLMSKVKVLFNFSNSSADVAGSWPLSSADQGENDPSLWLNDPSSSAGGIEIRDSVNTVTAATATVGNNKTVPVVSNPGSSSVVTEAPKNPQQNQGFVLRELNFSSSLKPESGEILSFGENKKGSYGGNSNNGGNNLFSVQSQSQSQFVSDENKKRRSPTSRSSIEDGILSFTSGVILPASNVKSGGGGGDSDHSDLEASVVKEAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESEKGELSKQLEDSKKELELASKNSGASQAAPLPPPPPPDKEQRSRASGVNGKLIDLEIEVKIIGWDAMIRIQCSKKNHPAARLMAALQDLDLEVHHASVSVVNDLMIQQATVNMGSRFYTQEQLMLALSSKVGGGGDAE 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182346g00001 656 Coils Coil 506 540 - -
Stsc182346g00001 656 MobiDBLite consensus disorder prediction 30 64 - -
Stsc182346g00001 656 MobiDBLite consensus disorder prediction 362 402 - -
Stsc182346g00001 656 MobiDBLite consensus disorder prediction 362 385 - -
Stsc182346g00001 656 MobiDBLite consensus disorder prediction 438 470 - -
Stsc182346g00001 656 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 66 247 IPR025610 -
Stsc182346g00001 656 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 463 528 IPR036638 GO:0046983
Stsc182346g00001 656 Gene3D - 452 540 IPR036638 GO:0046983
Stsc182346g00001 656 Coils Coil 652 656 - -
Stsc182346g00001 656 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Stsc182346g00001 656 MobiDBLite consensus disorder prediction 308 331 - -
Stsc182346g00001 656 MobiDBLite consensus disorder prediction 534 565 - -
Stsc182346g00001 656 SMART finulus 466 515 IPR011598 GO:0046983
Stsc182346g00001 656 FunFam Transcription factor bHLH13 453 527 - -
Stsc182346g00001 656 PANTHER MYC 22 648 IPR045084 GO:0003700|GO:0006355
Stsc182346g00001 656 MobiDBLite consensus disorder prediction 41 63 - -
Stsc182346g00001 656 CDD bHLH_AtAIB_like 457 533 - -
Stsc182346g00001 656 Pfam Helix-loop-helix DNA-binding domain 464 509 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182346g00001 Stsc-Chr182346 2521 4491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182346g00001 1 650 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.638 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc182346g00001 bHLH-MYC_N 5e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182346g00001 K13422 - gmx:100790854 724.931