Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182344g00001 ATGAGCTTCTCCCAAAACGACGTCGTCGTAGAAACCGAGCCAACCACACCACCAACACCAAACGACACTACCGTTTTGTTAGGCAAGTACGAGCTCCGCGAACTTCTCGGCGTAGGCGCGTCCGCTAAAGTGTACCACGCGACGCGCGTGACTGACGGTAAGAGCGTGGCAGTTAAGGCCGTTAGCAAACGCAACGTCCTCGCTAACGGCCTCGCCGAGAACCTTGAGCGTGAGATCTCCGTCACGCGCCGCCTCCGTCACCACCCAAACATCATCAACCTCCTCGAGGTCCTCGCCACCAAGACCAAAATCTACCTCATCATGGAGTTCGCCGCCGGCGGAGAGCTCTTCCAGAAGGTCGCCGACGGCGGCCGCATGACGGAAGACGTCGCCAGAAAATACTTCCGGCAGCTGATCTCCGCCGTGAAGCACTGCCACTCCGCCGGCGTCTACCACCGCGACCTCAAGCTCGACAACCTCCTTCTCGACGATGACGGCGACCTTCAAGTTTCCGATTTCGGATTGAGCGCCGTGAAGAATCAGATCCGACCCGACGGGTTGCTCCACACGGTTTGTGGGACCCCTGCTTACGTGGCACCCGAAATCTTGGCGAAGAAGGGATATAATGGGGCCACGGTGGACGTGTGGTCCTGCGGCGTCGTTTTGTTCGCATTGACCGTGGGATTTTTACCCTTCAATGATTACAATATTACAGTTTTGTACCGCAAAATTTACCGCGGTCAATTTCGGTGCCCGAAGTGGATATCTTCTGAACTCAAAAAACTTTTATCTCGTTTGCTCGATGTAAACCCGCAAACCCGAATTACCGTTGACGAGATTATGCAAGACCCGTGGTTTAATGCAGGTGGGTACCGGTTTAACCGGGTTTTAGTTGAACAACAAGAACCCGAGTGGGAAAAGAGTCAAATTAAAACTAAAATGCTAAATGCATTTGACTTGATATCGTTTTCGAGCGGGTTGGATATGTCGGGTCTATTTGTGAATTCGGGTGATCCGAATAAGGTGGAGAGATTTGTGTTAAGACAGAAAGTAGAGAGGATAATTGAGAAGGTGGAAGAGGTGGCTAAGGGTACCAAAATAAGAGTGAGAAGGAATGAGAAGTGTGAAGGTGCAAGGTTGGAAGGGCAAGATGGTAATTTAATTGCCCTTGTGTTGGTTTACCGGTTAACGGATGAGTTGGTGGTGGTTGAAGTGAAGAGTATTGGAAAGATGAATTGTAACCCCAATTTGATGAGTTGCCTCATGAAATTCTAG 1275 0.5075 MSFSQNDVVVETEPTTPPTPNDTTVLLGKYELRELLGVGASAKVYHATRVTDGKSVAVKAVSKRNVLANGLAENLEREISVTRRLRHHPNIINLLEVLATKTKIYLIMEFAAGGELFQKVADGGRMTEDVARKYFRQLISAVKHCHSAGVYHRDLKLDNLLLDDDGDLQVSDFGLSAVKNQIRPDGLLHTVCGTPAYVAPEILAKKGYNGATVDVWSCGVVLFALTVGFLPFNDYNITVLYRKIYRGQFRCPKWISSELKKLLSRLLDVNPQTRITVDEIMQDPWFNAGGYRFNRVLVEQQEPEWEKSQIKTKMLNAFDLISFSSGLDMSGLFVNSGDPNKVERFVLRQKVERIIEKVEEVAKGTKIRVRRNEKCEGARLEGQDGNLIALVLVYRLTDELVVVEVKSIGKMNCNPNLMSCLMKF 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182344g00001 424 SUPERFAMILY Protein kinase-like (PK-like) 26 296 IPR011009 -
Stsc182344g00001 424 FunFam Aurora kinase A 22 114 - -
Stsc182344g00001 424 SMART serkin_6 30 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182344g00001 424 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Stsc182344g00001 424 Pfam NAF domain 313 370 IPR004041 GO:0007165
Stsc182344g00001 424 CDD CIPK_C 316 406 - -
Stsc182344g00001 424 Pfam Protein kinase domain 30 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182344g00001 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Stsc182344g00001 424 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Stsc182344g00001 424 FunFam Non-specific serine/threonine protein kinase 111 292 - -
Stsc182344g00001 424 Gene3D Phosphorylase Kinase; domain 1 32 115 - -
Stsc182344g00001 424 ProSiteProfiles Protein kinase domain profile. 30 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182344g00001 424 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 21 407 - -
Stsc182344g00001 424 Gene3D Kinase associated domain 1, KA1 310 421 - -
Stsc182344g00001 424 MobiDBLite consensus disorder prediction 1 22 - -
Stsc182344g00001 424 Gene3D Transferase(Phosphotransferase) domain 1 116 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182344g00001 Stsc-Chr182344 6274 7548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182344g00001 19 409 CBL-interacting serine-threonine protein kinases AT2G30360 54.660 2.48e-154 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc182344g00001 Pkinase 3.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182344g00001 - K12761 gmx:100788245 501.516