Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182334g00004 ATGGAGAAGAAGGTTCGTCAGCTCCAAGAATCATTGACAAGGCTAGAAGAGAAGATTGCTAACGTAGAATCAGAGAACCAGGTTCTACGTCAACAAGCTGTCTTGATGGCACCTAATAAGTTCCTCCACAGACGCCAGAGCTCACTTGCCCAGAGAGAGAGGGCTTCTGAAAGTGCTCATAATAGTATTGCAGTGGAGGGGAAACCACATGTGACTAATCAGGAACTGCAAACTAGCCCATCAATGAATCAAAGGGAATCTTCTGAAGTGGATGATAAACCACAGAAATCACTAAACGAGAAACAACAAGAGAATCAAGAATTACTAATTAGATGCATTGCACAACATCTAGGATTTGCTGGAAATAGACCCATTGCTGCTTGTATCATATACAAGTGCCTCTTGCATTGGAGATCATTTGAAGTTGAGCGCACTAGCGTTTTTGATAGAATCATCCAGACTATTGGCCATGCAATTGAGACCCAGGATAACAATGATGTCTTAGCTTACTGGTTATCCAATGCCTCCACGCTTCTCTTGTTACTCCAGCGCACACTCAAAGCAAGTGGTGCTGCTGGAATGGCTCCACAACGCCGTCGTTCTCAATCAGCAACCCTGTTTGGGAGGATGACTCAAAGTTTCCGTGGAAGTCCAGCAGGAGTCAATCTGTCCTTAATTAATGGTAGTTCAAGTAGAGGAGTAGATACATGTAGACAAGTTGAAGCCAAGTACCCAGCTTTGCTTTTCAAACAGCAGCTTACAGCATATGTGGAAAAGATATATGGAATGATTCGTGATAACTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTGTGCATTCAGGCACCAAGAACATCTAGAGCAAGCTTGGTTAAGGGATCGTCACGTTCTGTTGCAAACACTGAAGCCCAGAAAGCTTTGATCGCTCACTGGCAGGGGATAGTTAAGAGCCTAGGGAACTTTTTAAATACATTGAAAGCAAATCATGTTCCGCCATTTTTGGTTCGTAAGGTGTTCACCCAAATTTTCTCTTTCATCAATGTACAATTGTTCAATAGTCTTCTTCTTAGACGAGAGTGTTGCTCATTTAGTAATGGAGAATATGTTAAAGCTGGTTTGGCTGAACTAGAGCATTGGTGTTATAAGGCAACAGATGAGTATGCAGGTTCAGCCTGGGACGAGCTTAAACATATTAGACAAGCCATTGGATTTCTGGTTATACATCAAAAACCAAAGAAAACACTGGATGAAATAAGTCATGACCTGTGCCCAGTCCTCAGTATACAGCAGTTATATCGGATTAGCACCATGTATTGGGATGACAAATATGGCACGCATAGTGTGTCACCTGAAGTCATATCCAATATGAGAGTGTTGATGACTGAAGATTCAAATAATGCAGTTAGTAATTCTTTCCTGTTGGATGATGACTCAAGCATTCCATTTTCTGTTGATGACATTTCAAAGTCAATGGAACAAATAGATATTGCTGATATAGATCCGCCGCCACTTATACGAGAAAACTCCGGGTTTAGCTTTTTATTGCCACGCCCAGATTGA 1560 0.4167 MEKKVRQLQESLTRLEEKIANVESENQVLRQQAVLMAPNKFLHRRQSSLAQRERASESAHNSIAVEGKPHVTNQELQTSPSMNQRESSEVDDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSQSATLFGRMTQSFRGSPAGVNLSLINGSSSRGVDTCRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQKALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPEVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSMEQIDIADIDPPPLIRENSGFSFLLPRPD 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182334g00004 519 Pfam DIL domain 338 441 IPR002710 -
Stsc182334g00004 519 ProSiteProfiles Dilute domain profile. 149 462 IPR002710 -
Stsc182334g00004 519 Coils Coil 5 32 - -
Stsc182334g00004 519 SMART DIL_2 337 444 IPR002710 -
Stsc182334g00004 519 MobiDBLite consensus disorder prediction 45 101 - -
Stsc182334g00004 519 MobiDBLite consensus disorder prediction 67 85 - -
Stsc182334g00004 519 PANTHER DILUTE DOMAIN-CONTAINING PROTEIN YPR089W 50 513 - -
Stsc182334g00004 519 CDD MyosinXI_CBD 100 485 IPR037975 GO:0007015
Stsc182334g00004 519 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182334g00004 Stsc-Chr182334 15952 20136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182334g00004 2 519 Myosins gene family AT1G54560 84.749 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182334g00004 K10357 - gmx:100816792 899.427