Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182332g00002 ATGCCACTCCCCAATACTAATCATCTATTCCCATTCTTCTGGCTCTTTTGCATAACGATTTGGTTTAACGCAATTCACGGTTCATCACAACCAAACAAAGCAGACTCACTGATCTTGGGTTGCGGTTTAGAAGGCGGTGGCAAAGACACCGACGGAAGACAATGGGAACCGGACAACAAGTACTTATCAGGGGGCAAATCCGTAACTTCAAAAGCCACCTTCCAAGACCCTTCGATTCTCTCCATTGTTCCTTACATGACAGCAAGAATCTTCCCATCGGAAGCCACCTACAAGTTCCCGGTTCAACCGGATAAGCGTTACTGGCTCAGGCTCCATTTCTACCCAGCTCTTTACTCCAATTTCGACCCTTCCAATTCCTATTTCTCCGTAACCGCCAATGGCGTCGTTCTCCTAACAAATTTCAGTGCATCAATCACATGCCAGGCTCTCTCTCAAGCCTACATTGACAGAGAATATTCCTTGGCGCCTCTCAATTCCAACTCCCTCACACTCACCTTTAAGCCATCGGAGCATCACGACGGCGCTTTCGCCTTCGTCAACGGCATTCAACTGGTCCAGATGCCGGACCTTTTTGACACAGCTACAATGGTAGGCTTTGCTGACCAATCAGTCTATTTAAAATCTTTGCATTCTCAAACGATGTTCAGATTAAACGTCGGCGGGCAATTCATCTCGCCGACACAAGACTCTGGCCTAAGCAGGATGTGGTACGACGACACACCGTATCTCTTCGGTGCGGCGACCGGCGTCACAACCCAAGCAGCCAAAGATGTCCAAATTAATTACCAAACCATGCCACAATACGTGGCTCCTCCCAACGTATACTCTACGTCAAGATCCATGGGGGAGGATAAGGATGTTAACCTTCGCTACAATCTCACATGGGTTTTTAATGTCGATCCGAATTCCATGTACCTTGCTAGGTTGCATTTTTGTGACTATTACTATTCCCAAGTGAATGAACTCGTCTTCCAGATCTTTCTCAACAACCAAACGGTTACAGATGATTTTGATGTTATTGCGGTGTCAGGTGGAAAAGGTGTTCCGATTTACAAAGACTATGTGGTGTATACCCAAGGAAATAATGAAGGCATAGGGAATACTCTTTGGCTTGCACTGCACCCTTCAGTGGATCAAAAACCGTCTTATTACGATGGTTTGCTTAACGGCGTTGAGATTTTTAAGCTCAACGACACAGATTTGTCTGGTCCTAATCCTTTGCCTTCCGCGTTGATGGAAGAGCACGAGGAAAAGGAACGGACCTTTGAAGAAGAGGAGGAAGGTGTCTCCGACACCACAAAAAAGCACATTGTGATTGGCGGCGCTGCGGCAGGCGGCGCTGGTTTCGCCGTAGTTGCTGCAATGCTCATTGTTGCTCATAAGAATAAAAAGAAGGCTCCGGCTTCGTACTCGAACACTTCGAGTTGGTTGCCGGTTTACGGGAACACGCACACCAATGGGACCAAAAAATCCATGTCAGGGAAGAGTAACGGTGGTGGTAGCAACCACTTGACAGCCATGACTCAGGGACTTTGTCGATACTTCTCGTTACAAGAAATGAGGCACGCAACGAAGAATTTCGACGAGTCAAATGTTATTGGTGTTGGAGGGTTTGGAAAAGTTTACAAGGGTGTGATCGACAATGGCTTTAAAGTAGCCATCAAAAGATCAAATCCGCAATCAGAACAAGGAGTGAATGAATTTCAAACAGAGATTGAGATGCTTTCCAAGTTAAGGCACAAGCATTTGGTTTCGTTGATCGGATTCTGTGAGGAAGGTGACGAGATGTGCCTTGTTTATGACTACATGGCTCTTGGCACTTTAAGGGAACATTTATACAAAGGAAACAAGCCATTGGAAACTCTAACATGGAAGCAAAGATTGGAAATATGCATTGGAGCCGCAAGAGGGCTTCATTACCTTCACACTGGGGCCAAATACACAATCATCCATAGAGATGTGAAAACAACTAACATCTTACTCGATGAGAATTGGGTTGCCAAGGTTTCGGATTTCGGGTTGTCGAAAACCGGTCCAAACATGAACCAAGGTCATGTTACCACCGTGGTGAAGGGTAGTTTTGGATATTTGGATCCTGAATACTTCAGGAGGCAACAGTTAACTGAAAAATCTGACGTGTACTCGTTTGGGGTAGTGTTATTTGAGGTCTTGTGTGCCAGGCCTGCATTGAATCCTAGCCTTCCAAAGGATCAAGTTAGCCTTTCGGATTGGGCTCTGCAGTGCAAGAGAAAAGGAACATTGGAGAACATCATTGATCCTTCTCTCAAAGGGAAGATCAACCCGGAGAGCCTGAACAAGTTCGCCGATGCCGCCGAGAAGTGTCTGTCCGATTGCGGACTCGATCGTCCCTCCATGAATGACTTGTTGTGGAACCTTGAATTTGCTCTCAACATGCAAGAGAACACTGCTGCTTCATCACATGTTGATGATGAAACTCATCAGTTTGAAGAAGCGAACTTGAATAATGACAATAATGACATGGAGGCACAAACTTGA 2538 0.4586 MPLPNTNHLFPFFWLFCITIWFNAIHGSSQPNKADSLILGCGLEGGGKDTDGRQWEPDNKYLSGGKSVTSKATFQDPSILSIVPYMTARIFPSEATYKFPVQPDKRYWLRLHFYPALYSNFDPSNSYFSVTANGVVLLTNFSASITCQALSQAYIDREYSLAPLNSNSLTLTFKPSEHHDGAFAFVNGIQLVQMPDLFDTATMVGFADQSVYLKSLHSQTMFRLNVGGQFISPTQDSGLSRMWYDDTPYLFGAATGVTTQAAKDVQINYQTMPQYVAPPNVYSTSRSMGEDKDVNLRYNLTWVFNVDPNSMYLARLHFCDYYYSQVNELVFQIFLNNQTVTDDFDVIAVSGGKGVPIYKDYVVYTQGNNEGIGNTLWLALHPSVDQKPSYYDGLLNGVEIFKLNDTDLSGPNPLPSALMEEHEEKERTFEEEEEGVSDTTKKHIVIGGAAAGGAGFAVVAAMLIVAHKNKKKAPASYSNTSSWLPVYGNTHTNGTKKSMSGKSNGGGSNHLTAMTQGLCRYFSLQEMRHATKNFDESNVIGVGGFGKVYKGVIDNGFKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEGDEMCLVYDYMALGTLREHLYKGNKPLETLTWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNQGHVTTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKDQVSLSDWALQCKRKGTLENIIDPSLKGKINPESLNKFADAAEKCLSDCGLDRPSMNDLLWNLEFALNMQENTAASSHVDDETHQFEEANLNNDNNDMEAQT 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182332g00002 845 PANTHER OS07G0166700 PROTEIN 518 813 IPR045272 GO:0004714|GO:0006468
Stsc182332g00002 845 Pfam Malectin-like domain 40 402 IPR024788 -
Stsc182332g00002 845 Pfam Protein tyrosine and serine/threonine kinase 538 801 IPR001245 GO:0004672|GO:0006468
Stsc182332g00002 845 Gene3D Phosphorylase Kinase; domain 1 496 609 - -
Stsc182332g00002 845 FunFam FERONIA receptor-like kinase 216 404 - -
Stsc182332g00002 845 SMART serkin_6 534 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182332g00002 845 ProSiteProfiles Protein kinase domain profile. 534 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182332g00002 845 Gene3D Transferase(Phosphotransferase) domain 1 610 836 - -
Stsc182332g00002 845 CDD STKc_IRAK 540 807 - -
Stsc182332g00002 845 ProSitePatterns Protein kinases ATP-binding region signature. 540 562 IPR017441 GO:0005524
Stsc182332g00002 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Stsc182332g00002 845 SUPERFAMILY Protein kinase-like (PK-like) 511 809 IPR011009 -
Stsc182332g00002 845 FunFam FERONIA receptor-like kinase 36 195 - -
Stsc182332g00002 845 Gene3D - 216 404 - -
Stsc182332g00002 845 Gene3D - 40 195 - -
Stsc182332g00002 845 FunFam Receptor-like protein kinase FERONIA 610 826 - -
Stsc182332g00002 845 FunFam receptor-like protein kinase FERONIA 496 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182332g00002 Stsc-Chr182332 7530 10158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182332g00002 35 839 Receptor kinase-like Gene Family AT3G51550 53.461 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc182332g00002 Malectin_like 8.3e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182332g00002 - - gmx:100815737 1257.66