Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182328g00003 ATGGAATACCTCCTCATAGAACTTTTCCAAATTTTGAAGGAGCAAAGGGACAACTTCTGCATTCAACTTGTTGCTTTTGCCACACGTGAGAATGCAGTCTTTGAAAAGCACAAGATGCAACCTCTTTGCTCTTTGGCGGTGAACAAAAGCTGTCTTCACTCCGATGTCAACTCAACCCCAACGGCAAGGAAGTTAGCTGACCAGAAGCTGTTTCAGAGGCTGAGGAAGAGTCTCCGGGCCACTCGCCTTGTGCTTGATGATGCTGAGCAGAAGCAGATGATAGACCATGAAGTGGAGAAATGGCTCGTTGATCTCCAAGATGCTCTCTATATGGCTGATGACTTGCTCGATGAACTCTTAACTAAAGCTGCCACTCTCACTCCCACTCCCACTCCCACTGAAAGGGATCCAGGTAACTCTTCTTTCTGGTCTCGCCCTGTTGATTCAATCTTGGAAGATAGTGATGATGATGAGATGCGGATAGTAACTAGCATGCTAGACTTAGTTGATAAACTAGAGTCTATTGTTGAGGAGAAAGATGATCTTGGTCTAAAACAAGAGCTTGCTGAAGATCCAGAGAACATGTCATGGAGAATTCAATCATCTCTGGTTGAATCTTCTGATATATATGGCAGGGACGGTGCCAAGGAGACCATTATTGAATGGTTGTTAGATAACACTTGTGATGGTAAATTGTCTGTAATCTCTATAGAAGGTATAGGCGGAATTGGAAAAACAACTTTGGCTCAGTTGGTTTACAATGATGCCAGAGTGAAGGAGACGTTTGCCACTAAAGCATGGGTGTGTGTTGCCACAAAATTTGATCCTGTTAATGTTACAAAGGCTATAATAGATGACATAATTTCTTCTACTTGTAACATGCTTAGCTTGAATTCACTTCAAATTGAATTGAAGGAAAAGTTAAGAGAGAAGACATTTTTAATTGTTTTAGATGATGTTTGGGAAAATCAGCAAGATTTGTGGGACAATTTTCTAAAACCGTTTTTGAGTGGGAATAAAGGAGGTAAAGTTCTTTTAACCACTCGTAATAAAAATATTGATTCTGTAGTGTCAACTACGAATCTGCATTATAAATTAGATATATTGTCTGACGAAGATTGCTGGTCTTTGTTTTCAAAACATTCATCTATTTCTACTCGTTCTAGGAAAAATGTAATTCTAGAACAAATTGGAAAAAAAATTGTTGAAAAGTGTAAGGGATTACCTTTGGCGATAAAGACACTTGGGGGCTTATTGCACAATACTGATAATGAAGAAGATTGGGAGAACATACTGGAAAATGAAATCTGGAAGCTTTCGGAAGATAAGAGTAAGATTACTCCTGCATTAAGAGTTAGTTATCACTACCTTCCTCCATATTTAAAAGGTTGTTTTGTTTATTGCTCATTATACCCTGCGGATTATCAATTTGACAAACAACAATTAATCTTGCTATGGATGGCTGAAAATCTTGTACGACCAGAAGAAAACAACACCTTAGAAAATGTTGGTCATGCATATTTTGATGAATTAGTTGCAAGGTCATTTTTTCAACCTTCTAGTAAAGATGTTAGCTTATTTGTAATGCATGATCTCATGCATGATCTAGCAACATCTTTTGCTGAGGATTTCTATTTTAGGGTCAATGAATTTGAGAACTCACAAAAAACTTGCCCCAAAACTACTCGTCATTTGTCATACACTACAAATATTAGGGATTCAATCTTACGTCCTGGAGAGGCCTTTGATAGAGCAAAACATATGAGAACATTTCTAAATGTTAATTTTCATTTTGTATCAATTGATATTCAAAATGAATATTTGCTCTCACTTTTACAAATGAGGTGTTTAAGAGTTTTGTCATTTAAATGTTTTTCTATTGAGTCATTGCCTGATTCAATAGATAATCTGCTCCATTTGCATTATCTGGATCTCTCTTATACACCTATTGTGAGTTTGTCTGAGTCATTGTGCAAATTATACAATCTCCAAACGTTGAAGTTGAGTTATTGTAATAATTTGGAAATGCTTCCGGACGGCACGAAAGATCTTGTGAACCTGAGCCACCTTGATATCGAAGGAACTTATATGTTGAAAGAGATGCCCAAGGGAATGAGCAATTTAAAACATTTGTATTCATTATGGCGCTACATTGTTGGGAGGCACGAAGACAATGGGATAAGAGAATTGGGAACACTTGACAATCTTCATGGCTCACTTTGCATTTCCAACTTAGAGCATATCAACAACAGCCGTGAAGCTTTGGAGGCAAAGATGGGTAACAAGAAGCAACTCCACATCTTGGAATTGAAATGGCTTCGTGATGGTGATGGTGATGATATTGACACTGTTGATGTTCAAAAAGAGAGAGATATACTCGACAAGTTACAACCTCACCGAAACTTGAAAGAGTTATCCATTGATGGTTATGGGGGTGAAACATTCCCCAATTGGTTTGGCTTTTCTTGCTACTCCAATATAACAAAATTGAGTATGCATGATTGTAGTAATTGTCGTCAGCTTCCTTCACTGGGACAGTTACCCTCTCTGCAGCGTCTGGAGATTTCTAGACTTGATGGGCTGGAGATAATTGGCTGTGAGTTTTACAGCAGTGATGAATCATCTCAGCAGGAGACACCCTTCAAATCCCTTGAAACTTTGATATTTAAGAATATGTCAAGTTGGCGGGAGTGGCATTTTCCGGATGATTTTGATGGTTTTCCGAAACTTAAAAGCCTTTTAATGGAAGACTGTCCGGTGTTAACCGGAGATCTGCCTGCTCACCTTCCAGCTCTAGATAACCTTATCATTGTTGGATGCGAAGAGCTTGCATGTTCATTGCCGATAGCACCCAAGCTTCTCCAATTACGTGTAAGGAGTACGGTGACACATATGGAGGATCCTGAACTGCCCCCGGAAATATTGCGCGAGTCATTAATTGAAGAAACTCAGCTGGCGAAGTTCGTATTGGAGTGCCTGCCCCACGTCCAACCGCCTGGTCTCCAAACTTTGAATATCAACAAGTGTTCATCGGCCATGCCAATTTCTGGAGATTATTTGCCTCCATCGTTGCAATGTCTGACGATCTCTGATTGTTCGGGGTTAACATTCTCAAATCAACTGCAACACGAGTTCCTAACGGAGATACATGTGGAAGAATGTGAATCACTGACATCGTTTCTCTTGGCTGCACTTCCAAATCTCATGACACTCATAATAGCAGGTTGCGAAAACATGGAATATGTTGAGATGGCAGAGGCTCTTCCAAGTCTCAGTTATTTAAGCATTGCAAACTGCCCCCGTTTAGTATCCTTTGCGGCGCTAGGCTTGGGTGCGGCTGCTCCCAACCTGGAGGAACTGGAAATATGGAAATGCCCAGAAATGGATTCTTTTGGAGAGGAGTGCCTCCCGCCGAGCTTGGCAACTCTGTGGATCGATAACTGCCAGAAACTAGGTAGGTGGATAACATCCAAGGGCTTTCAAGGTCAAGGACTTACCAAGCTTATCCTTGAAGACTGGAATGATGTTAAGTCGTTCCCAAGAGAGGGTTGGTTTCCTGCTTCCCTTCAGTCTCTAAATTTGTGTGACTTTCCAAATCTGGAGACGCTAGACTGCAAGGGGCTTCAACATCTCACTTCCCTCCAAGAACTCTCAATTGTTTTGTGTCCAAAGCTGGAGAATATCACACAAGAAAACCTGCCTGCCTCCTTATCGAAACTCCGCATCAAGGGAGAATGTCCATTGAGGAGTAAGTTGCAAGAGATGAACGACCTGAGGATTCAATTCGAAACTAATGACCACAGAGGTAATTGTTTTTGCTCTCATCTCCCCTAG 3834 0.4053 MEYLLIELFQILKEQRDNFCIQLVAFATRENAVFEKHKMQPLCSLAVNKSCLHSDVNSTPTARKLADQKLFQRLRKSLRATRLVLDDAEQKQMIDHEVEKWLVDLQDALYMADDLLDELLTKAATLTPTPTPTERDPGNSSFWSRPVDSILEDSDDDEMRIVTSMLDLVDKLESIVEEKDDLGLKQELAEDPENMSWRIQSSLVESSDIYGRDGAKETIIEWLLDNTCDGKLSVISIEGIGGIGKTTLAQLVYNDARVKETFATKAWVCVATKFDPVNVTKAIIDDIISSTCNMLSLNSLQIELKEKLREKTFLIVLDDVWENQQDLWDNFLKPFLSGNKGGKVLLTTRNKNIDSVVSTTNLHYKLDILSDEDCWSLFSKHSSISTRSRKNVILEQIGKKIVEKCKGLPLAIKTLGGLLHNTDNEEDWENILENEIWKLSEDKSKITPALRVSYHYLPPYLKGCFVYCSLYPADYQFDKQQLILLWMAENLVRPEENNTLENVGHAYFDELVARSFFQPSSKDVSLFVMHDLMHDLATSFAEDFYFRVNEFENSQKTCPKTTRHLSYTTNIRDSILRPGEAFDRAKHMRTFLNVNFHFVSIDIQNEYLLSLLQMRCLRVLSFKCFSIESLPDSIDNLLHLHYLDLSYTPIVSLSESLCKLYNLQTLKLSYCNNLEMLPDGTKDLVNLSHLDIEGTYMLKEMPKGMSNLKHLYSLWRYIVGRHEDNGIRELGTLDNLHGSLCISNLEHINNSREALEAKMGNKKQLHILELKWLRDGDGDDIDTVDVQKERDILDKLQPHRNLKELSIDGYGGETFPNWFGFSCYSNITKLSMHDCSNCRQLPSLGQLPSLQRLEISRLDGLEIIGCEFYSSDESSQQETPFKSLETLIFKNMSSWREWHFPDDFDGFPKLKSLLMEDCPVLTGDLPAHLPALDNLIIVGCEELACSLPIAPKLLQLRVRSTVTHMEDPELPPEILRESLIEETQLAKFVLECLPHVQPPGLQTLNINKCSSAMPISGDYLPPSLQCLTISDCSGLTFSNQLQHEFLTEIHVEECESLTSFLLAALPNLMTLIIAGCENMEYVEMAEALPSLSYLSIANCPRLVSFAALGLGAAAPNLEELEIWKCPEMDSFGEECLPPSLATLWIDNCQKLGRWITSKGFQGQGLTKLILEDWNDVKSFPREGWFPASLQSLNLCDFPNLETLDCKGLQHLTSLQELSIVLCPKLENITQENLPASLSKLRIKGECPLRSKLQEMNDLRIQFETNDHRGNCFCSHLP 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182328g00003 1277 Gene3D Ribonuclease Inhibitor 580 971 IPR032675 -
Stsc182328g00003 1277 Coils Coil 745 765 - -
Stsc182328g00003 1277 Gene3D - 368 452 IPR042197 -
Stsc182328g00003 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 468 IPR027417 -
Stsc182328g00003 1277 SUPERFAMILY L domain-like 999 1244 - -
Stsc182328g00003 1277 Coils Coil 71 91 - -
Stsc182328g00003 1277 PRINTS Disease resistance protein signature 307 321 - -
Stsc182328g00003 1277 PRINTS Disease resistance protein signature 234 249 - -
Stsc182328g00003 1277 PRINTS Disease resistance protein signature 658 674 - -
Stsc182328g00003 1277 PRINTS Disease resistance protein signature 405 419 - -
Stsc182328g00003 1277 Gene3D - 453 539 IPR036388 -
Stsc182328g00003 1277 Pfam NB-ARC domain 214 454 IPR002182 GO:0043531
Stsc182328g00003 1277 MobiDBLite consensus disorder prediction 126 146 - -
Stsc182328g00003 1277 PANTHER DISEASE RESISTANCE PROTEIN RP 84 921 IPR044974 GO:0006952
Stsc182328g00003 1277 Gene3D - 61 150 - -
Stsc182328g00003 1277 SUPERFAMILY L domain-like 528 945 - -
Stsc182328g00003 1277 Gene3D Ribonuclease Inhibitor 1160 1257 IPR032675 -
Stsc182328g00003 1277 Gene3D Ribonuclease Inhibitor 972 1159 IPR032675 -
Stsc182328g00003 1277 Pfam Rx N-terminal domain 63 125 IPR041118 -
Stsc182328g00003 1277 Gene3D - 194 362 IPR027417 -
Stsc182328g00003 1277 FunFam Probable disease resistance protein At1g63360 454 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182328g00003 Stsc-Chr182328 4700 11577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182328g00003 235 864 WRKY Transcription Factor Family AT5G45050 22.552 8.15e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182328g00003 - - aip:107628003 1274.23