Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182327g00003 ATGGGTGAGGTGGTTGTTAGCGAGAGGTTAGTTGGAACGGAGGAGGTAGAGGAGGAGAAGCAGCAAATGACTACAGCGGTGGCGACGGCGACGGCGACGGTGGAGGAAGAGACTACTGCAACCGAGGTCAAAGGCGGAGGAGGGGAATTGAAGGGGCTGATGAGGTGGGAGAAGTTCTTGCCGAAGATGGTACTGAGGGTGCTCTTGGTTGAAGCTGATGATTCAACGAGGCAGATTATAGCGGCGCTACTTAGAAAATGCAGCTACAAAGTGGCTGCTGTTCCTGATGGCCTAAAGGCATGGGAAATATTGAAGGGAAGACCGCGCAATATCGATCTAATCCTGACGGAAGTGGATTTACCAGCCATATCTGGCTATGCACTTCTCACATTAATTATGGAACATGATATTTGCAAAAATATACCTGTCATAATGATGTCCGCACAAGATTCAGTAAGTACAGTATACAAATGTATGCTGAGGGGAGCTGCTGATTATCTTGTTAAGCCCCTTAGAAAAAATGAATTGAGGAATTTGTGGCAGCATGTTTGGAGAAGGCAATCGTCAACTGTTGCAATGAATGGCCCCCAAGATGAGAGTGTTGCGCAGCAGAAGGTTGAAGCCACTGCTGAAAACAATGATGCTAGTATTCATTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATAAGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGCACAAAGCCTGACCTGGAAGCTGAGAGTGGCCCTGTCGACAACGTGCAGGAATTTGCTTCACTGAGATGTGGCGAATCATATCCAAGTGGAACAATGACACAAGAGGTTGAAACGTCCATGCGTTTGGGGCAGATATCAGTTATGCATGAGAGTCATGCTGGAGGATTACCGGTGGCTAGTAGCAAAAATGGTGAGACAAGCACAACCAATGGCAAGGATGGTGATACAAAGCATTTTAGGAGTGCTGCCATCAGTGGTGAGGCTCATGACAATCACTGTGTTCAAATTAGCTGTTCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATAATCGTCCTAACTGCAGTCTCAAAGCTCCAACAGTTAATTGCACAGGGAAGTTCGATGTCATTCCGCAGTTGGATCTTTCCCTAAGAAGATCTCATCCCAGCAACTGTGAGAATGAACTTGCTGAAGAAAGGAATACCCTCATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACAAACAGACAATTTCAAGCCTCACCTGCAATTTTGAACTTCTCTGACCAACAAAGAGAGCGGAGAACGAATTGCGAGAAAAGCATCTCCTATTTTGCTACTGGCTGTAATTCAGATAGTTCAACACCTAGTGTGCAAAGAAATCTTGTATCTCCAACTACACCCCAATCAAAAGAATCTGAAGCAGCAACTTCACACTCGCAACAGCAAGGGCATTCTCTCCCGATTGCAGTTAAAGGTGTAAGGTTCAATGATTTATGCACAGCCTATGGTTCTGTACTTCCTCCAATGTTTCGCACACAATCGGGTCCACCATCGGTGCCTAGCCCCAGTTCAGTTATGCTTCTTGAACCAGCCTTTCAAGTAAATGCATTTTATCGGTCAGATGTTAAAGACAATAGTTCAGAGCAGGTTTATGAATCTCATGGTTCCGGTGGAAAAAGTGCTCCAAACAACATTATCTCCAGACTGGAACACAAGCCAGAACATGCTGAGGATCAAAGACATATCTCTCCTGCAACTGATCAAAGTGGTTCTGGTAGCTTCTGTAACGGAAATGCGAGCCATCTTAATAGCATGGGGTACGGAAGCAACTGCGGAAGTAGCAACATTGTTGATCAGGTCCCAATTGTCAGAGCAGCTTCAGAGGCTAAGAATGAAGACATCGCAAACAATGCGAGCTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAGTTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATACGAGAGCAGAAAGAAATTAGCAGAGCAGCGCCCAAGAGTGAAAGGTCAATTCGTTCGTCAAGTCCAGCCAGATGCTCTTGCTGCAGAAAAAGATGGCAAAGAATACGATATTTAG 2115 0.4511 MGEVVVSERLVGTEEVEEEKQQMTTAVATATATVEEETTATEVKGGGGELKGLMRWEKFLPKMVLRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEILKGRPRNIDLILTEVDLPAISGYALLTLIMEHDICKNIPVIMMSAQDSVSTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSTVAMNGPQDESVAQQKVEATAENNDASIHSSGDAACIQRNKELIEKGSDAQSSCTKPDLEAESGPVDNVQEFASLRCGESYPSGTMTQEVETSMRLGQISVMHESHAGGLPVASSKNGETSTTNGKDGDTKHFRSAAISGEAHDNHCVQISCSKEAIDLIGAFHNRPNCSLKAPTVNCTGKFDVIPQLDLSLRRSHPSNCENELAEERNTLMHSNASAFKRYTNRQFQASPAILNFSDQQRERRTNCEKSISYFATGCNSDSSTPSVQRNLVSPTTPQSKESEAATSHSQQQGHSLPIAVKGVRFNDLCTAYGSVLPPMFRTQSGPPSVPSPSSVMLLEPAFQVNAFYRSDVKDNSSEQVYESHGSGGKSAPNNIISRLEHKPEHAEDQRHISPATDQSGSGSFCNGNASHLNSMGYGSNCGSSNIVDQVPIVRAASEAKNEDIANNASSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVQPDALAAEKDGKEYDI 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182327g00003 704 ProSiteProfiles Response regulatory domain profile. 66 184 IPR001789 GO:0000160
Stsc182327g00003 704 MobiDBLite consensus disorder prediction 572 593 - -
Stsc182327g00003 704 SUPERFAMILY CheY-like 65 190 IPR011006 -
Stsc182327g00003 704 SMART REC_2 65 180 IPR001789 GO:0000160
Stsc182327g00003 704 ProSiteProfiles CCT domain profile. 645 687 IPR010402 GO:0005515
Stsc182327g00003 704 MobiDBLite consensus disorder prediction 448 484 - -
Stsc182327g00003 704 CDD psREC_PRR 67 170 - -
Stsc182327g00003 704 Pfam Response regulator receiver domain 67 178 IPR001789 GO:0000160
Stsc182327g00003 704 Pfam CCT motif 645 687 IPR010402 GO:0005515
Stsc182327g00003 704 MobiDBLite consensus disorder prediction 298 319 - -
Stsc182327g00003 704 Gene3D - 63 269 - -
Stsc182327g00003 704 PANTHER TWO-COMPONENT RESPONSE REGULATOR 65 250 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182327g00003 Stsc-Chr182327 11053 16151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182327g00003 576 689 Response Regulator Gene Family AT5G24470 46.491 1.28e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Stsc182327g00003 Response_reg 6.9e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182327g00003 K12130 - gmx:100777119 1013.06