Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182327g00002 ATGCAGCTACAAAGGAATGTGATGGGGATATGGGGTTCAATGAAAATCCAAGGAACTAATGTGGCTGCTGTTCCTGATGGCCTAAAGGCATGGGAAATATTGAAGGGAAGACCGCGCAATATCGATCTAATCCTGACGGAAGTGGATTTACCAGCCATATCTGGCTATGCACTTCTCACATTAATTATGGAACATGATATTTGCAAAAATATACCTGTCATAATGATGTCCGCACAAGATTCAGTAAGTACAGTATACAAATGTATGCTGAGGGGAGCTGCTGATTATCTTGTTAAGCCCCTTAGAAAAAATGAATTGAGGAATTTGTGGCAGCATGTTTGGAGAAGGCAATCGTCAACTGTTGCAATGAATGGCCCCCAAGATGAGAGTGTTGCGCAGCAGAAGGTTGAAGCCACTGCTGAAAACAATGATGCTAGTATTCATTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATAAGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGCACAAAGCCTGACCTGGAAGCTGAGAGTGGCCCTGTCGACAACGTGCAGGAATTTGCTTCACTGAGATGTGGCGAATCATATCCAAGTGGAACAATGACACAAGAGGTTGAAACGTCCATGCGTTTGGGGCAGATATCAGTTATGCATGAGAGTCATGCTGGAGGATTACCGGTGGCTAGTAGCAAAAATGGTGAGACAAGCACAACCAATGGCAAGGATGGTGATACAAAGCATTTTAGGAGTGCTGCCATCAGTGGTGAGGCTCATGACAATCACTGTGTTCAAATTAGCTGTTCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATAATCGTCCTAACTGCAGTCTCAAAGCTCCAACAGTTAATTGCACAGGGAAGTTCGATGTCATTCCGCAGTTGGATCTTTCCCTAAGAAGATCTCATCCCAGCAACTGTGAGAATGAACTTGCTGAAGAAAGGAATACCCTCATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACAAACAGACAATTTCAAGCCTCACCTGCAATTTTGAACTTCTCTGACCAACAAAGAGAGCGGAGAACGAATTGCGAGAAAAGCATCTCCTATTTTGCTACTGGCTGTAATTCAGATAGTTCAACACCTAGTGTGCAAAGAAATCTTGTATCTCCAACTACACCCCAATCAAAAGAATCTGAAGCAGCAACTTCACACTCGCAACAGCAAGGGCATTCTCTCCCGATTGCAGTTAAAGGTGTAAGGTTCAATGATTTATGCACAGCCTATGGTTCTGTACTTCCTCCAATGTTTCGCACACAATCGGGTCCACCATCGGTGCCTAGCCCCAGTTCAGTTATGCTTCTTGAACCAGCCTTTCAAGTAAATGCATTTTATCGGTCAGATGTTAAAGACAATAGTTCAGAGCAGGTTTATGAATCTCATGGTTCCGGTGGAAAAAGTGCTCCAAACAACATTATCTCCAGACTGGAACACAAGCCAGAACATGCTGAGGATCAAAGACATATCTCTCCTGCAACTGATCAAAGTGGTTCTGGTAGCTTCTGTAACGGAAATGCGAGCCATCTTAATAGCATGGGGTACGGAAGCAACTGCGGAAGTAGCAACATTGTTGATCAGGTCCCAATTGTCAGAGCAGCTTCAGAGGCTAAGAATGAAGACATCGCAAACAATGCGAGCTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAGTTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATACGAGAGCAGAAAGAAATTAGCAGAGCAGCGCCCAAGAGTGAAAGGTCAATTCGTTCGTCAAGTCCAGCCAGATGCTCTTGCTGCAGAAAAAGATGGCAAAGAATACGATATTTAG 1905 0.4373 MQLQRNVMGIWGSMKIQGTNVAAVPDGLKAWEILKGRPRNIDLILTEVDLPAISGYALLTLIMEHDICKNIPVIMMSAQDSVSTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSTVAMNGPQDESVAQQKVEATAENNDASIHSSGDAACIQRNKELIEKGSDAQSSCTKPDLEAESGPVDNVQEFASLRCGESYPSGTMTQEVETSMRLGQISVMHESHAGGLPVASSKNGETSTTNGKDGDTKHFRSAAISGEAHDNHCVQISCSKEAIDLIGAFHNRPNCSLKAPTVNCTGKFDVIPQLDLSLRRSHPSNCENELAEERNTLMHSNASAFKRYTNRQFQASPAILNFSDQQRERRTNCEKSISYFATGCNSDSSTPSVQRNLVSPTTPQSKESEAATSHSQQQGHSLPIAVKGVRFNDLCTAYGSVLPPMFRTQSGPPSVPSPSSVMLLEPAFQVNAFYRSDVKDNSSEQVYESHGSGGKSAPNNIISRLEHKPEHAEDQRHISPATDQSGSGSFCNGNASHLNSMGYGSNCGSSNIVDQVPIVRAASEAKNEDIANNASSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVQPDALAAEKDGKEYDI 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182327g00002 634 ProSiteProfiles Response regulatory domain profile. 1 114 IPR001789 GO:0000160
Stsc182327g00002 634 Gene3D - 6 200 - -
Stsc182327g00002 634 MobiDBLite consensus disorder prediction 228 249 - -
Stsc182327g00002 634 SUPERFAMILY CheY-like 14 120 IPR011006 -
Stsc182327g00002 634 MobiDBLite consensus disorder prediction 502 523 - -
Stsc182327g00002 634 Pfam CCT motif 575 617 IPR010402 GO:0005515
Stsc182327g00002 634 MobiDBLite consensus disorder prediction 378 414 - -
Stsc182327g00002 634 SMART REC_2 1 110 IPR001789 GO:0000160
Stsc182327g00002 634 Pfam Response regulator receiver domain 14 108 IPR001789 GO:0000160
Stsc182327g00002 634 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 180 IPR045279 GO:0009736
Stsc182327g00002 634 ProSiteProfiles CCT domain profile. 575 617 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182327g00002 Stsc-Chr182327 11053 16151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182327g00002 506 619 Response Regulator Gene Family AT5G24470 46.491 9.16e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Stsc182327g00002 Response_reg 4.5e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182327g00002 K12130 - gmx:100777119 933.71