Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182306g00002 ATGGATTCTCTCCCAAATTCGAAAGGTGAAGTTGGTAGGGTAGAGCAATGCTACTCAACGCTTACTCAAGCATTGCATGTTTCTTCAGATAATATTACTAGTGAAACATTGAACATATGTGAAGATGGAAGTCCGCCGGATTATGATAATTTGGAAGATAAATGTGAAACGAAAAATGAAATGAATTTAGAAAAGTCGACTTGTGCAAACAATCTATCTATGTCGTCTAATATTCTGATTGAAAATGAAGATCTAGAAGAGGGAGAACTTGTTGGAGACATTGGAGTGGATCTCTTGCACAAACGCAAATTGGAAGAGGACTCTGACCATGATCATGGGAACCCAGTTGCATCAAAGAAGGCTGATGTCAGCTGTAAGAAAAAGCGTGGCCCTGTTTCTGCGGAAAAGAAAGCGAAAAAGAAGATAAAGAAGAGGAAAATACGGGCAGAAAAGAACAAGGAACTTGGTCTCAAAAGGTTGAAGTTGCCTCTAGTACAACAGAAACCAAAAACTATCAATTATTGTCGCCATTTTCTTGTGGGAAGATGCTATGAGGGTGACAAGTGCCAGTTTTCACATGATACAGTGCCTTCTACCAAATCATCGCCATGCTCCTTTTTTGCTCGTCACTCCTGCATGAAAGGAGATGACTGTCCTTTTGATCATCAACTTTCCAAGTATCCTTGTGATAACTTTGTGTCCAGAGGCTTTTATGCCAGAGGTGATGCGTGTTTGTTTTCACACAAGTTACCAGCCAAGGAAGACATTCCTACACCTTCAAAGGTTTGCAAACCAGGAATGAAATCACACTTTTCAGGAAACACAATTTTCAACATGCCACCTAACATTCATGGCTGTAGTTCTATCCAACAGAACCATTTAATCAATTCTCCAAGAGTTCTCTCTCACATCAATTTGGAACATAAAGTGACAAACACTGTACAGAAACGGCCTAAGCTTGCATCTAAAGGAGTTAGCATCATCGATGTTGCAAAGCTTTCATCGCCTACTCCTACTACACCAAAAGAAGGCACTACCAAAGTTGGCTCATCCTTTGCTGACCAAAGTACATCTGGAACAAATCAAACCTCGGTGGAGATTCCAAAGAAATTGCCGTCTAGGGTTCCAAAGGGAATTAACTTTCTTGCTTTTGGCAAAGATCCTGTGAACAGTTTTAAGAGTTCTTTCAAGTCCCTTGTAAATGCGGAAAATGGTATTGGTGTCCTCCAGAATATAAGTTTTAGTTTGCTTGATCATAATAATTCACCCATAAAAGTGGATGATGGCAGCAAAGCTATTGATGGAACAAAAGAAAGGGTACCACAGATTGATTTAGTCTCAGGTAAGATTTTCGAGAAAAATCAATCTGTGGCAGAAATGATAAAATTGAGTTTTCCGGGGAAAGCATCGATGAATGATTCTTCTACTGGTTTAAAAGGTACCTCTCATGTGGATGACAATGAAAGGAAACCGCTACAAGAGGCAAAAGGGGCAACTGATCTTTTTCAAACTTCCGCAGCGGCTCCATTTATGCGTCTGGTTTCTCCTTTATCATCAGAACAGCTACCATCTAGAAAGGAGCTCTTGTCGACTTTATTATCATTTGCAGCGGAGCATGGATTAGTTATCAAGAAGAAAGATTCTGCTGGTACTTCAACCGCATAA 1665 0.4006 MDSLPNSKGEVGRVEQCYSTLTQALHVSSDNITSETLNICEDGSPPDYDNLEDKCETKNEMNLEKSTCANNLSMSSNILIENEDLEEGELVGDIGVDLLHKRKLEEDSDHDHGNPVASKKADVSCKKKRGPVSAEKKAKKKIKKRKIRAEKNKELGLKRLKLPLVQQKPKTINYCRHFLVGRCYEGDKCQFSHDTVPSTKSSPCSFFARHSCMKGDDCPFDHQLSKYPCDNFVSRGFYARGDACLFSHKLPAKEDIPTPSKVCKPGMKSHFSGNTIFNMPPNIHGCSSIQQNHLINSPRVLSHINLEHKVTNTVQKRPKLASKGVSIIDVAKLSSPTPTTPKEGTTKVGSSFADQSTSGTNQTSVEIPKKLPSRVPKGINFLAFGKDPVNSFKSSFKSLVNAENGIGVLQNISFSLLDHNNSPIKVDDGSKAIDGTKERVPQIDLVSGKIFEKNQSVAEMIKLSFPGKASMNDSSTGLKGTSHVDDNERKPLQEAKGATDLFQTSAAAPFMRLVSPLSSEQLPSRKELLSTLLSFAAEHGLVIKKKDSAGTSTA 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182306g00002 554 Gene3D - 154 197 - -
Stsc182306g00002 554 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 109 397 IPR045124 GO:0003723|GO:0045892
Stsc182306g00002 554 MobiDBLite consensus disorder prediction 105 131 - -
Stsc182306g00002 554 SUPERFAMILY CCCH zinc finger 169 194 IPR036855 GO:0046872
Stsc182306g00002 554 Gene3D - 198 263 - -
Stsc182306g00002 554 ProSiteProfiles Zinc finger C3H1-type profile. 198 225 IPR000571 GO:0046872
Stsc182306g00002 554 ProSiteProfiles Zinc finger C3H1-type profile. 169 196 IPR000571 GO:0046872
Stsc182306g00002 554 ProSiteProfiles Zinc finger C3H1-type profile. 228 251 IPR000571 GO:0046872
Stsc182306g00002 554 SMART c3hfinal6 226 250 IPR000571 GO:0046872
Stsc182306g00002 554 SMART c3hfinal6 170 195 IPR000571 GO:0046872
Stsc182306g00002 554 SMART c3hfinal6 198 224 IPR000571 GO:0046872
Stsc182306g00002 554 MobiDBLite consensus disorder prediction 334 365 - -
Stsc182306g00002 554 MobiDBLite consensus disorder prediction 105 138 - -
Stsc182306g00002 554 Pfam CCCH-type zinc finger 175 194 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182306g00002 Stsc-Chr182306 12546 16891 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc182306g00002 zf-CCCH_4 2.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182306g00002 - - ahf:112710376 709.523