Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182303g00003 ATGGAACAAGTTCAAGAAGCTCAACCTCAATCACTCGGTCAAGAAGATGAAAATGAAGTGGTTGCTGAAAGCTCTGCTTTTGTTAAAGGGGAACTTCCAGCAGAATATAGCATGCCTCCCAAAGTTGATTCTGAAGTTGAAGTCCTTCACGAGAAGGTCACCAAGCAAGTAATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCATCCATTACAGGGGTTGGTCCGAAAGCACCCAGCACAAGTTTGATGACACATGGCAGGAGCAGCGACCTATTGAGATGGTATTAGGAAAAGAAAAGAAAGAAATGACTGGCTTGGCTATTGGTGTGGCAAACATGAATGATGGTGAGCGTGCATTGCTACGCGTGGGTTGGGAATTAGGATATGGTGAGGAAGGAAGTTTTTCTTTCCCCAATGTTCCTCCCAAGGCAGATTTAGTTTATGAAGTTGAGCTTATTGGCTTTGATGAAACAAAAGAAGGAAAAGCTCGTAGCGATATGACTGTGGAGGAAAGGATTGGTGCAGCAGATCGTAGGAAGATGGATGGAAATGCTTTGTTTCAGCAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCATATATGGGAGACGATTTTNNNNNNNNNNAATATAGAGATATGGCTTTGGCTGTAAAGAATCCATGCCATCTTAACATGGCAGCTTGTCTGATTAAGCTGAACCGTTATGAAGAAGCTATAGGACAATGTACAATCGTACTGAGTGAGGATGAAAACAATGTCAAGGCTCTATTTAGGAGAGGCAAGGCTAGGGCAGCACTTGGTCAAACAGATGCTGCCAAGGAAGATTTTCAAAAGGCGCGCAAGTATGCCCCTGAAGACAAAGCCATTGCAAGAGAACTGAGGTTGCTTGCCGAACACGACAAAGTTGTTTATCAAAAGCAGAAAGAACTATACAAAGGAATATTTGGACCAAGGCCAGAACCAACACCTAGTAATAAGCGAAGTGGTAACCTGCTGATTCTCATTTGGCAGTGGTTGCTTTCACTATTTTATGGCCTTCTTAATCTCTTCAAGCGTCAAAGCCCCAAGTCTGACTAA 1107 0.4264 MEQVQEAQPQSLGQEDENEVVAESSAFVKGELPAEYSMPPKVDSEVEVLHEKVTKQVIKEGHGQKPSKYSTCFIHYRGWSESTQHKFDDTWQEQRPIEMVLGKEKKEMTGLAIGVANMNDGERALLRVGWELGYGEEGSFSFPNVPPKADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFQQEKLEEAMQQYEMAIAYMGDDFXXXXYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCTIVLSEDENNVKALFRRGKARAALGQTDAAKEDFQKARKYAPEDKAIARELRLLAEHDKVVYQKQKELYKGIFGPRPEPTPSNKRSGNLLILIWQWLLSLFYGLLNLFKRQSPKSD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182303g00003 368 SMART tpr_5 229 262 IPR019734 GO:0005515
Stsc182303g00003 368 SMART tpr_5 263 296 IPR019734 GO:0005515
Stsc182303g00003 368 SMART tpr_5 181 214 IPR019734 GO:0005515
Stsc182303g00003 368 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 65 158 IPR001179 GO:0003755
Stsc182303g00003 368 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 96 338 IPR039663 -
Stsc182303g00003 368 SUPERFAMILY FKBP-like 32 167 - -
Stsc182303g00003 368 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 69 161 IPR001179 GO:0003755
Stsc182303g00003 368 Pfam Tetratricopeptide repeat 264 296 IPR013105 -
Stsc182303g00003 368 FunFam Peptidylprolyl isomerase 166 291 - -
Stsc182303g00003 368 MobiDBLite consensus disorder prediction 1 18 - -
Stsc182303g00003 368 Gene3D - 37 162 IPR046357 GO:0003755
Stsc182303g00003 368 ProSiteProfiles TPR repeat profile. 263 296 IPR019734 GO:0005515
Stsc182303g00003 368 MobiDBLite consensus disorder prediction 1 25 - -
Stsc182303g00003 368 SUPERFAMILY TPR-like 173 309 IPR011990 GO:0005515
Stsc182303g00003 368 Gene3D Tetratricopeptide repeat domain 163 291 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182303g00003 Stsc-Chr182303 16346 20074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182303g00003 52 325 Calmodulin-binding Proteins AT3G25230 32.734 2.37e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182303g00003 - - gmx:100790587 620.928