Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182303g00001 ATGAAGCGATTGAGGTCAAGCGAAGATCTCCACTCTTACGGTGATAAAAATGGCTGCAAGGATTCGAATCTGAACCGGTCCTTTTCGTCGTCGCAGCGAAACTTCTATTATAAGCCTGACAGTGCGCCGCGGAAAGGCTCGCTATCTTCGTCGTCGTCCTCTCGCCATGACAGAGATCGAGCGTTGGATGAGGATCGGGACGGTTCAAGGATGGTTCGGAAGCGATCGGAACATGATTTCGACGGTTTCGATCGGAGGAAGGGGTTTGATCGGTACAGAGACGGTGGCGGTTACGGCAGCGGTGGAGGAGGAGGTGACAGAGGTTTGATTCACCGGTCAGAGAGCTTCTGCGGAGGTTCTAGGAGGGAGTTTCCTAAGGGGTTTCGGTCCGAGAGGGATCGGCCAAGGAGGGAAAACAGCGTGTCCTCGTGGCGGAGAGGGCTGAAGGATTTTGATGAGAACGGTGGCGGAAGCAGAGGGAGTAGTAGGGTTTCTTCAGCGACGGAGGAGAGGGTGGTGAGGTCCCCGAGGTCGCCGAAGGGTTTGAGGGATGTGAAGTCGCCAACAAGGTCGAAGGACTCTGAAAGTGAGCAATCGAAGAAGAGGTCTTCGTCTCCGAGAGTATCACTAAGAGATGACAAGTCTAAGTCCAAGTCAAAGTCACCAACATGGTCCAAGGACTCAGAAAGTGAGCAATCCAAAAGTTGTGAGCGATCCAAGAGCGTTGAGCAGTTTAAGAGCGTTGAGCAGTCTAAGAATGTTGAGCAACCCAAGAGTGTTGAGCAACCCAAGAGTGTTGAGCAGTCCAAGATCATTGAGGTGAAGAAAACCGAGGAGTTACATGTTCAGAGTGGAAGCAGCAGTGAAATGGAAGAAGGGGAGTTGGAACCTGAACCTGCTCCTGCTCCTCAGGCTGAACCAGAGGCGGCTCCCAAAGTTGCTTCTGAAAGTGAAGACCGCAAAGATTCTGCCCTTTTGGAGAATGCTGAGAAGGAAGTCATGAACGAATGTGCGGCCAATGATGCAAAGGATGCAAAAGGGGACGTACAATTATCTGAGGAAAAACCTAACATGGACGTTGATCCTGAGGTGAATAATGCAGAAAAGGAAGCTGATAAGGTGCAAGATTTTCAAGACAATCCTGCGAAGGATGTGTCTATTGCTGAGACTGAAGTTGTCAAACTGGCTCATGATGATGATAATAGAAAAGAAGGGTGTTTGAAGGCTGATGATGCTGAGTGCAAAGAGGAAACAAAGAAGGATGCAGATTTGGCGATGCCTGTGGTTAATAAAGAGGAGCAGAAACAGGACAAGGGTGTAGATTTGAAAGCCAGCACAGGTCTTGACAAACTAGAGTTAAGTGGTGAAGTCTCAAGAGAGAATGAAGCTCCAAAAGAAGTGCATAGGGAATTCATGGTGGAGGGTGTGGCCAACAATGCAAAGGATAAAGGGAAAAGTGTCTCTGTTACCCCTACTAATGTTGCCCATTCTTCAGAAGATTGCTTGTGGACTGATAGAGGATCAAGAGATCTTGCGACATGCTCTGCTGATGTTATGGAGGGACCTAGCACCAGGGGATTCGAGTTATTTTCTAGATCTCCTGTCAGAAAACCAGAGAAAAAGGAGCAGTCAGGTCTCAACAAGAAGAAGGATGATGGTCTTGGAATGGAGCAGCTTGATCTTTCTCTTAGCTTACCAAATGTTTTGTTACCTATTGGTGCTCATGAGACGACAACACAAGCCCCTGGATCCCCCAGTCAAGCCCGGAGTGTGCAGTCTTTAAGTACTACATTCTGTACCAACTCGGATGGTTTTACTGCATCAATGTCCTTTTCAGGTTCCCAATCTCTCTACCACAATCCAAGCTGTTCTCTAACAAAAAATTCAGTTGACTATGAACAATCTGTTGGCAGCCGCCCCTTATTTCAGGGAATTGATTGGCAAAGCCTCTCTCAGAATGATCCGAAACAGAAAGAAGTTCCTTTTAGTAAGATAACTTCTGCAAATGGAAATGGTTCATTTTACCAGACACAAGCATCATGGGGTGGTGTTTTAGATGGTCAAGTTGTGAAAGGTCAACATTCTAGGGTCCTAGAAGGAAGCACAAAAATGGGCAGTGGACTAGACAGGCAATTGAGTTTTCAGAAGCAGTTTTCGGGACAGTCAAGACGATATGATGATGTTAGATCTCCTACACACAGTGCTGGGTCTCATGACATTGGGTCAAATTATAGTCGTGAGAAAAAGGGGGAAGCCAGGGATAGGAGTAGTGGCAGTTTGTATCGAACTAATAGCCAGAAGGAGCAAGAACAAATTCTGATGGGTGGGGTTGACTTTGTTGAGAATATCATTGCAAGACTGGTTTCTGAGCCAGTGAATGCAACGACTCGAAAGTTCCATGAAATGGCAGGACAGCCTGTAGCATTTCTGAAGGAGGGCATTCGGGAAATCATGCGTAATCCAGATAAGCATGGGCAGATACTTGCTTTTCAAAAGGTTCTGCAAAATAGGTCTGACATAACCTTGGATGTCTTACTGAAGTGTCATCGAATACAACTTGAAATTTTGGTTGCTTTAAAAACTGGTTTAACCCATTATCTTCACGTCGACAACAGCATTCCATCTTCTGATTTAGCTCAAGTTTTTCTGAACATAAGATGTAGGAATCTTTCATGTAGAAGCCAATTGCCTGTGGATGAATGCGATTGCAAGGTTTGTGCACAGAAAAATGGTTTTTGCAGGGAATGCATGTGTCTTGTGTGTTCTAAGTTTGACAATGCATCAAATACATGTAGTTGGGTTGGGTGTGATGTTTGCCTTCACTGGTGTCATACTGACTGTGGGTTACGAGAATCTTATATTAGAAATGGACACAGTACTACTGGGACTAGAGGGATGACAGAGATGCAGTTTCATTGTATTGCTTGTGATCACCCGTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCAAAATTTTGCCAAAGATTGGCCAGTGGAAAATCTCTGCAAGGAGCTTGAATATGTGAAGCGGATTTTTTCTGCCAGCAAGGACATGAGAGGGAGACAACTTCATGAGATTGCAGATCAAATGCTACCAAGGCTGGTAAACAAGTCGAACCTTCCTGAGGTTTTGAGGCACATAATGTCTTTCCTTGTTGATGGTGATTCTTCCAAATTAGCCATGGCTACAAACATATCTGGGAAGGAACGAATTAAGGAAATCAATGGGGTAGCTGGGCCAAGCCAGGAAGCTTCTTGGCTGAAATCTACTTATTCAGAGAAGAAACCTGTGTTAGAAAAGGCAGCAAACATCCTTCCCAGCTTTGACCAAAATGATAAAAGGACACTGGCGCCTGAGCTGCAAATGAGTATTGTCCAAAAGGACTTCTGTTTTGATGAATTGGAGAGTGTAGTTAAAATCAAACAAGCAGAGGCTAAAATGTTTCAGTCACGTGCTGATGATGCAAGAAGAGAAGCTGAAGGGTTGAATCGCATTGCCCTTGCTAAGAGTGAGAAAATAGATGAAGAATATACTCAGCGAATTGCCAAGCTGAGACTGGGTGAGACAGAGGAAATGCGTAGGCAGAAACTTGAAGAACTTCAAGCATTAGAACGGGCACATCTGGAGTATTTCAACATGAAAATGAGAATGGAGGCAGACATTAAAGATCTTTTATCTAAAATGGAAGCTACTAAAAGGAGTCTTGCCCTGTGA 3717 0.4517 MKRLRSSEDLHSYGDKNGCKDSNLNRSFSSSQRNFYYKPDSAPRKGSLSSSSSSRHDRDRALDEDRDGSRMVRKRSEHDFDGFDRRKGFDRYRDGGGYGSGGGGGDRGLIHRSESFCGGSRREFPKGFRSERDRPRRENSVSSWRRGLKDFDENGGGSRGSSRVSSATEERVVRSPRSPKGLRDVKSPTRSKDSESEQSKKRSSSPRVSLRDDKSKSKSKSPTWSKDSESEQSKSCERSKSVEQFKSVEQSKNVEQPKSVEQPKSVEQSKIIEVKKTEELHVQSGSSSEMEEGELEPEPAPAPQAEPEAAPKVASESEDRKDSALLENAEKEVMNECAANDAKDAKGDVQLSEEKPNMDVDPEVNNAEKEADKVQDFQDNPAKDVSIAETEVVKLAHDDDNRKEGCLKADDAECKEETKKDADLAMPVVNKEEQKQDKGVDLKASTGLDKLELSGEVSRENEAPKEVHREFMVEGVANNAKDKGKSVSVTPTNVAHSSEDCLWTDRGSRDLATCSADVMEGPSTRGFELFSRSPVRKPEKKEQSGLNKKKDDGLGMEQLDLSLSLPNVLLPIGAHETTTQAPGSPSQARSVQSLSTTFCTNSDGFTASMSFSGSQSLYHNPSCSLTKNSVDYEQSVGSRPLFQGIDWQSLSQNDPKQKEVPFSKITSANGNGSFYQTQASWGGVLDGQVVKGQHSRVLEGSTKMGSGLDRQLSFQKQFSGQSRRYDDVRSPTHSAGSHDIGSNYSREKKGEARDRSSGSLYRTNSQKEQEQILMGGVDFVENIIARLVSEPVNATTRKFHEMAGQPVAFLKEGIREIMRNPDKHGQILAFQKVLQNRSDITLDVLLKCHRIQLEILVALKTGLTHYLHVDNSIPSSDLAQVFLNIRCRNLSCRSQLPVDECDCKVCAQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHSTTGTRGMTEMQFHCIACDHPSEMFGFVKEVFQNFAKDWPVENLCKELEYVKRIFSASKDMRGRQLHEIADQMLPRLVNKSNLPEVLRHIMSFLVDGDSSKLAMATNISGKERIKEINGVAGPSQEASWLKSTYSEKKPVLEKAANILPSFDQNDKRTLAPELQMSIVQKDFCFDELESVVKIKQAEAKMFQSRADDARREAEGLNRIALAKSEKIDEEYTQRIAKLRLGETEEMRRQKLEELQALERAHLEYFNMKMRMEADIKDLLSKMEATKRSLAL 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182303g00001 1238 Coils Coil 1187 1207 - -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 158 172 - -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 51 93 - -
Stsc182303g00001 1238 Coils Coil 1215 1235 - -
Stsc182303g00001 1238 Pfam Coiled-coil region of Oberon 1101 1226 IPR032535 -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 173 245 - -
Stsc182303g00001 1238 Coils Coil 1139 1159 - -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 116 153 - -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 525 554 - -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 312 363 - -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 742 756 - -
Stsc182303g00001 1238 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 837 852 IPR004082 -
Stsc182303g00001 1238 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1172 1194 IPR004082 -
Stsc182303g00001 1238 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 878 899 IPR004082 -
Stsc182303g00001 1238 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1133 1153 IPR004082 -
Stsc182303g00001 1238 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 798 820 IPR004082 -
Stsc182303g00001 1238 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 924 944 IPR004082 -
Stsc182303g00001 1238 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 852 867 IPR004082 -
Stsc182303g00001 1238 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 997 1016 IPR004082 -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 532 554 - -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 18 37 - -
Stsc182303g00001 1238 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1235 IPR004082 -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 719 767 - -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 1 363 - -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 246 266 - -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 268 282 - -
Stsc182303g00001 1238 MobiDBLite consensus disorder prediction 1 16 - -
Stsc182303g00001 1238 CDD PHD_OBE1_like 917 976 IPR047578 -
Stsc182303g00001 1238 Pfam PHD - plant homeodomain finger protein 887 1010 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182303g00001 Stsc-Chr182303 3240 8061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182303g00001 885 1035 PHD Gene Family AT5G57380 27.815 6.49e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182303g00001 - - ahf:112789425 2096.63