Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182301g00002 ATGGCTTCTTCTTCAACTTCAACGTGGGTTAGAGGCAAGTGCTTGGGAAAGGGCGCCTTTGGTACCGTTAACGTGGCGGTTACAAAATCTGACGGTTACGTTTTCGCGGTTAAGTCCGTGGATCTTAAAACGGCTCAAGCAGGTCAGATTGAAGCTCTGGAGAACGAGATTAGGATCCTCAGGCTTCTACCTCCGAGTCCTCACGTGATCACTTTCCTTGGCGATGATGTCACGTGCGAGAGGACCAACGGAGCCTCGTCCTTTAGGAACCTGCACTTGGAGTACATGCCACGTGGCACCGTCGCTGATTTAGACCCTGCTGACGTGGACGAACGGTTGGTTCGCCGTTACGCTTCCTGCTTGGTTCACGCGCTTCGCCACCTCCACGCGCTTGGCGTTGTTCACTGCGACGTTAAGGGAAGGAACGTGCTGCTTTCCAACGACGGCGGGGCGGTGAAGCTCGCAGATTTTGGATCCGCTGTGGAGTTTTCCGGCGAGAGTTGCGTTGGTTCGAGGGGGAGTCCGATGTGGATGGCGCCGGAGGTTGTTCGCCGGGAGTATCAGGGGCCGGAGTCTGACGTGTGGTCGTTGGGGTGCACGGTGATTGAGATGATCACCGGAAAACCACCGTGGGAGGATCACGGCGCTGACACGCTGAGTCGGATCGGGTATTCTAGCGAGTTACCTCTGTTTCCGACTCGGTTATCGGAATTCGGTCGGGACTTCCTCGAGAAGTGTCTGAGAAGGGAGAAGAGTGAGAGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTTTTGATCAGTGAGGGTTTAATTAAGGCTTTGGAATCGTCGCCTCGGTGCGTTTTGGACTGGGTTGACTCGGGTTTCGACTCGGAGGAAGAAGAAGGCGAGATGAACTTGGAAGGTGAAAGTGTGAGTTCGGCGAAGGGTAGAATTGGTAAATTGGCTGCGGGAATGGGGGCAAATTGGGAAACAGAGGGATGGGTAGTGGTGAGAGCATTGGCATCTGAGTCTGACGAAGAAGCAACGATAATAACAGAAGCAACAGGAAACTGTGAAGAAAGGGCCGTTTCGGAATTTGGAAATGAGGTGGCGAGGGTAGAATCGGGAATCAAGGTGGATGCTCATGCTCATGTGGAATATTCGGCTTTTTGTGGAAGGAAAGGAGAGAAAGTTGGAAGGGTAAAATGGGGAAAGCGAAAAAACAAAAGGTTGGTGTGGCGGCGGTGGAAGCTCCACCGTCAGGGAGGTGGTGGTTGTGGTGATGATAAGTGGGAAGATGAGTTGGATAGGAATGGGAGACATGAGGATATTGTCCATTTGTCCTCAAGATCCTAA 1341 0.5295 MASSSTSTWVRGKCLGKGAFGTVNVAVTKSDGYVFAVKSVDLKTAQAGQIEALENEIRILRLLPPSPHVITFLGDDVTCERTNGASSFRNLHLEYMPRGTVADLDPADVDERLVRRYASCLVHALRHLHALGVVHCDVKGRNVLLSNDGGAVKLADFGSAVEFSGESCVGSRGSPMWMAPEVVRREYQGPESDVWSLGCTVIEMITGKPPWEDHGADTLSRIGYSSELPLFPTRLSEFGRDFLEKCLRREKSERWSCDQLLQHPFLISEGLIKALESSPRCVLDWVDSGFDSEEEEGEMNLEGESVSSAKGRIGKLAAGMGANWETEGWVVVRALASESDEEATIITEATGNCEERAVSEFGNEVARVESGIKVDAHAHVEYSAFCGRKGEKVGRVKWGKRKNKRLVWRRWKLHRQGGGGCGDDKWEDELDRNGRHEDIVHLSSRS 446
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc182301g00002 446 CDD STKc_MAPKKK 9 266 - -
Stsc182301g00002 446 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
Stsc182301g00002 446 Pfam Protein kinase domain 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182301g00002 446 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 7 344 - -
Stsc182301g00002 446 FunFam Serine threonine protein kinase putative 7 317 - -
Stsc182301g00002 446 SUPERFAMILY Protein kinase-like (PK-like) 7 275 IPR011009 -
Stsc182301g00002 446 ProSiteProfiles Protein kinase domain profile. 9 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182301g00002 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc182301g00002 446 SMART serkin_6 9 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182301g00002 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc182301g00002 Stsc-Chr182301 7701 9803 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182301g00002 9 347 MAP Kinase Kinase Kinase AT2G30040 60.117 4.59e-136 397
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc182301g00002 Pkinase 3e-54 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182301g00002 - - tpra:123921217 449.899