Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182296g00001 ATGAAGAAGAAGTATAAAGGGGTGAGAATGAGGAGCTGGGGTTCATGGGTTTCTGAGATTAGAGCACCCAACCAGAAAACAAGAATATGGCTTGGTTCATATTCAACCCCTGAAGCCGCAGCAAGAGCCTATGACGCTGCACTTCTTTGCCTTAAAGGAACCTCGGCCAATCTGAACTTCCCTTCGTCAAATTATTCATTGTCAGACAACATTCAAGAACTAAAGGGGACTGATATCATGTCCCCGAAATCCATTCAAAGAGTTGCCGCCGCCGCTGCAGCAGACAGAGTTCTTGATAACAAGAAGGGAAGCAATAATAATAATAACCCACTGCCATCACCTCCTCCCACTCCTCTTTGCGATTATCTCGGTGACGGTGTTGATCCCCTTAACGATGATCAGACACATGAAACATTATTGGGTATGAATATGATGGACTATTATTGCACCGGTTTTGGTGATGTGTTGCAATCACCAAGATATGCTGATCAGATGCAAACTGATGCAGTGTTCTTTGATATTGATTCGACTCAGATGATGATGATTGATGATCTATATAGTGACATTCGTTTGTGGAACTTCTGCTGA 588 0.432 MKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGTSANLNFPSSNYSLSDNIQELKGTDIMSPKSIQRVAAAAAADRVLDNKKGSNNNNNPLPSPPPTPLCDYLGDGVDPLNDDQTHETLLGMNMMDYYCTGFGDVLQSPRYADQMQTDAVFFDIDSTQMMMIDDLYSDIRLWNFC 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182296g00001 195 CDD AP2 3 63 IPR001471 GO:0003700|GO:0006355
Stsc182296g00001 195 Pfam AP2 domain 4 53 IPR001471 GO:0003700|GO:0006355
Stsc182296g00001 195 FunFam ethylene-responsive transcription factor ERF014-like 3 63 - -
Stsc182296g00001 195 SMART rav1_2 4 67 IPR001471 GO:0003700|GO:0006355
Stsc182296g00001 195 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700|GO:0006355
Stsc182296g00001 195 Gene3D AP2/ERF domain 3 62 IPR036955 GO:0003700|GO:0006355
Stsc182296g00001 195 SUPERFAMILY DNA-binding domain 4 63 IPR016177 GO:0003677
Stsc182296g00001 195 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Stsc182296g00001 195 PRINTS Ethylene responsive element binding protein signature 27 43 IPR001471 GO:0003700|GO:0006355
Stsc182296g00001 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 107 - -
Stsc182296g00001 195 MobiDBLite consensus disorder prediction 98 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182296g00001 Stsc-Chr182296 10916 11503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182296g00001 5 93 AP2-EREBP Transcription Factor Family AT1G21910 78.022 1.41e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc182296g00001 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182296g00001 - - cam:101495993 188.348