Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182284g00001 ATGGGAATATCAAACACTACTTACAACTCAGTGTTGTATATTAATGCTGATTTTGAAGAGGTCAAGTCCTTCAAACAAAGGTCACAATCTGTTTCATTATCTGAAGACTTTCTTATTAAAACTGAGTATAGGTCAATTTCTCAGCTAAAGGACGTGATTGAGAAATCTACATATGTAACCATTGGAACTGTTGTTGATTTTACCCCCGGCAAATCTTGGTGGTACATGGGATGCAAAAGTTGCAAATTAGGATTGAAAAAGGGAGTTGATTTTTATAGTTGCCGAGTGTGTGGTGATGGAAACCAGACATTTGAACCAAGATACTCTCTTCATCTTAAGGTTGCTGATGAGACTGATATAGCATCCTTTATTATTTATGAAACTGTTGGAGATGCTTTTCTTGGTATTACTGCTGACAATTTAAGATCCACTCATTTGCTTAAGGGAGGTGGCAAAAATGATTTTCCGAAGGAGCTGAATGCTTTTATAGGAAAAAGATTTCTCTTCAAAGTTACTGTAAAGTTAGAGAATATTAATGCTTTCCAACCTGTTTCCATATCTGTGGTCAAGCTTTGTGACGATGAAAGCATCATACGTGCCTTTGCTGAGAAGTACAACATTGATAATGTACCTCTTATTGACAATGACAATGAGCCATTGATGTTGACACAAAATAGCAACTGCGAGGAAATGAGTAAGGGTTCTCAATCTCAGGTTTTTGAGACAAAACCTATTAAAAAAAGTTCAGAATTTATCACTCCTGCCCAGTCTGAGGAGAAACATATTACATGTATTAATTTTGATGATTCTCTCCAAGATGACACTTTAACTCCTTCCAAATCAAGAGGAAAAGAAAAATTGAAGAAAAATCCAGCAGAATTTTATGCAAATGATGAAGTTGTTGATGTAAATATTGATGACAAAAGGGATGGGGTTGCATTTTGTGCTGAACAGCCATCAAAGAAATATGATTTATCCAGTATAAAGATGAAAAACGTCAAAAGAAAGATCAAAGAAGATGACTAA 1026 0.3509 MGISNTTYNSVLYINADFEEVKSFKQRSQSVSLSEDFLIKTEYRSISQLKDVIEKSTYVTIGTVVDFTPGKSWWYMGCKSCKLGLKKGVDFYSCRVCGDGNQTFEPRYSLHLKVADETDIASFIIYETVGDAFLGITADNLRSTHLLKGGGKNDFPKELNAFIGKRFLFKVTVKLENINAFQPVSISVVKLCDDESIIRAFAEKYNIDNVPLIDNDNEPLMLTQNSNCEEMSKGSQSQVFETKPIKKSSEFITPAQSEEKHITCINFDDSLQDDTLTPSKSRGKEKLKKNPAEFYANDEVVDVNIDDKRDGVAFCAEQPSKKYDLSSIKMKNVKRKIKEDD 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182284g00001 341 SUPERFAMILY Nucleic acid-binding proteins 44 192 IPR012340 -
Stsc182284g00001 341 Gene3D - 31 200 IPR012340 -
Stsc182284g00001 341 PANTHER OS03G0429900 PROTEIN 12 304 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc182284g00001 341 CDD RPA1_DBD_C 46 190 IPR047192 -
Stsc182284g00001 341 Pfam Replication factor-A C terminal domain 58 191 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182284g00001 Stsc-Chr182284 3634 5345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182284g00001 54 188 Core DNA Replication Machinery Family AT5G08020 26.619 5.39e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182284g00001 - - adu:107473575 246.514